| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2722 |
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| Symbol | |
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| ID | 5870510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3050250 |
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| End bp | 3051716 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641547843 |
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| Product | GMC oxidoreductase |
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| Protein accession | YP_001668955 |
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| Protein GI | 167033724 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.305214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAGG ACTATCAGCA GCAGAAGGCG CTGCGCGACA ACTACGATTT CTGCATCATC
GGTGCCGGGC CGGCGGGCAT TACCCTGGGC TTACGCCTGG CCGCCGCTGG CTGGAACGTG
ATGCTCGCCG AAGGCGGTGG GCGCGAATAT GCGCCGCATT CGCAAAGCCT GTACGCCTGC
GCATCCACGG GCCTGGAGCT GTATCCCGAG GAAACTCGCC TGCGCTATCT GGGAGGCACG
TCCAACCACT GGGCAGGGCG CTGTCGGCCG TTCACCCCTT CGGACTTTAC CATCGCCCCT
CCGGGTGATT TACCGGGTTG GCCTATTCCT TATTCGGAGA TCGAAGGTTA CCTGCCGGCA
GCCATGGATA TCGTCGACCT GCCTGCCGGC TCGGATTTTC GCGCCATGAA CACCGGCCTG
ACGGGTGGTG ACTTCGAGGC AGATCGGTTT CTGCTCAGCA CGCCGACACG CTTTGCGCAA
AAGTACGCCA CGGCACTGGA GCAGACCAAA GGCCTGGACG TGTTCATCAA CTGCAACTGC
GTGGACCTTG AGTTCGACAA AGCTTCCGGC CACCTGGCGG CGGTGGTGTT GTCCGACTAT
GAACGCAATC GTCAGCGCCT GGTGGCCAGA AACTTCATTC TGGCCACGGG GGCCATCGAG
AATGCCCGGC AGTTGCTTAA CAGCGAGACG CTGGTGGCGG CCGGTGTGGT GAACAAGGAA
GGGCTGGCCG GCGGGTGTTT CATGGAACAC CTGAACATCG ACCTGGGCAC CTTCATCCTC
AAGTCCGGGC AGGACCCGGA GCCCCGCCAG TACTACACCA CCGATGCCTT CGTCGACGAG
TACAAGGCCG GTAAAGGCAA TGTCACCGCC GCTTTGCTGG CGGATGTGCA AACCTATGGC
CGTACTGCCG AGGTCAAGCA CTTTCTGGAG AACCTGGCCT GCGACATGGG GGTTGCCAGC
AAGGTCGCCT TCGTCGCCAA GTTCAGCTGC CCTGGTGACG GCGTGATCAG CACCATGATC
GAGCAGTTCC CCAACCTGCA CAGCCGCATC TCGCTGCTGG AGGAAAAGGA CGCACTGGGC
GTAGCCAAGG TCAATGTCAA CTGGGCGCTC AGCGCCGATG ACCGGCATAC CATCAAGTGC
ATTGGCAGCG AACTGGCCAA GCAGTTCGCC GACATGGACC TGGGCTTCGT CAAGCTGAAC
GACTTCGTTT ATGACACCTC GATTCCGCTG AAAATGGCGC CCCATGCCCA CCACATGGGC
ACCACGCGCA TGGCCGCTTC GCCGCAGTTC GGTGTTGTCG ATGCCAATTG CAAAGTGTTC
GGCACCGAAA ACCTGTATGT CGCCGGCAGC AGCATCTTCG CCAAGGGCGG CGCTTCCAAC
CCGACCATGC CGCTGTTGCA ATTTGCCGTG CGGCTGGCCG ACCACCTCGA TAGCAAGATG
AGAGCGGCCA GCGGCGCCGC TGCGTGA
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| Protein sequence | MIKDYQQQKA LRDNYDFCII GAGPAGITLG LRLAAAGWNV MLAEGGGREY APHSQSLYAC
ASTGLELYPE ETRLRYLGGT SNHWAGRCRP FTPSDFTIAP PGDLPGWPIP YSEIEGYLPA
AMDIVDLPAG SDFRAMNTGL TGGDFEADRF LLSTPTRFAQ KYATALEQTK GLDVFINCNC
VDLEFDKASG HLAAVVLSDY ERNRQRLVAR NFILATGAIE NARQLLNSET LVAAGVVNKE
GLAGGCFMEH LNIDLGTFIL KSGQDPEPRQ YYTTDAFVDE YKAGKGNVTA ALLADVQTYG
RTAEVKHFLE NLACDMGVAS KVAFVAKFSC PGDGVISTMI EQFPNLHSRI SLLEEKDALG
VAKVNVNWAL SADDRHTIKC IGSELAKQFA DMDLGFVKLN DFVYDTSIPL KMAPHAHHMG
TTRMAASPQF GVVDANCKVF GTENLYVAGS SIFAKGGASN PTMPLLQFAV RLADHLDSKM
RAASGAAA
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