| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2689 |
|---|
| Symbol | |
|---|
| ID | 5870477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3014980 |
|---|
| End bp | 3015936 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641547810 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001668922 |
|---|
| Protein GI | 167033691 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.779862 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGCC GCCTGCTGAG CGAACGCAGT AGCGTGTTTC ACCACGCCGA CCCTTATGCT
GTGTCCGATT ATGTGAACCA GCATGTGGGC CAGCATTGCA TCGGTCTGTC GCGTACCACC
CACCCTCAGG CCAGCCTCAG CCACCGCAAG TTCGCCGAAC TCGACTTGTG TCGTATCAGC
TACGGTGGCA GCGTGCGCGT TACCTCGCCA GCACTGGAAA CCATTTACCA CCTGCAAGTG
CTGCTCAACG GCAATTGCCT GTGGCGCGGG CACAAGCGCG AACAGCACCT GATTCCAGGG
GAGCTGCTGC TGATCAACCC GGACGACCCA GTTGATCTGA CCTACTCAGA AGACTGCGAG
AAGTTCATCC TCAAGGTGCC GACCCGCTTG CTGGACTCGA TCTGCGATGA ACAGCGCTGG
CATCGGCCAG AAGGCGGCGT GCGGTTCTTG CGCAACCATT ATCGGTTGGA TGAACTGGAC
GGGTTCGTGA ACCTGCTGGC GATGGTTTGC CATGAAGCGG AAGTGAGCGA CTCGCTACCC
AGGGTGCAGG GCCATTACAG CCAGATTGTC GCCAGCAAGC TGCTGACCCT GATGAGCACC
AATATCCGCC GCGAAAGCCT GGGATCGCCT GGCGTAAGCC TTGATCGGAT CATCGAATAT
ATCGATCGCA ACCTCAAACT TGAGCTGCCA GCCGAGGCGC TGGCAGAGCA GGCGTGCATG
AGCCTGCGGT CGTTGTATGC GTTGTTCGAC CGGCATCTTG GTACTACGCC CAAGCAATAT
GTGCGTCAGC GCAAGCTGGA GCAGGTGCGT GCCTGTCTGG GAGATGCCAG TTGTGCAGTG
CGTAGCGTGA CTGAACTGGC CTTGGATTAT GGCTTCCTGC ACCTGGGGCG CTTTTCCGAA
GTGTATCGGC ACCAGTTTGG TGAATTGCCT TCGGAAACTT TCCGTAACCG GCGCTGA
|
|---|
| Protein sequence | MESRLLSERS SVFHHADPYA VSDYVNQHVG QHCIGLSRTT HPQASLSHRK FAELDLCRIS
YGGSVRVTSP ALETIYHLQV LLNGNCLWRG HKREQHLIPG ELLLINPDDP VDLTYSEDCE
KFILKVPTRL LDSICDEQRW HRPEGGVRFL RNHYRLDELD GFVNLLAMVC HEAEVSDSLP
RVQGHYSQIV ASKLLTLMST NIRRESLGSP GVSLDRIIEY IDRNLKLELP AEALAEQACM
SLRSLYALFD RHLGTTPKQY VRQRKLEQVR ACLGDASCAV RSVTELALDY GFLHLGRFSE
VYRHQFGELP SETFRNRR
|
|---|
| |