| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2674 |
|---|
| Symbol | |
|---|
| ID | 5870462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2997428 |
|---|
| End bp | 2998756 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547795 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001668907 |
|---|
| Protein GI | 167033676 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00893] d-galactonate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.758956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACACA GCCCCGCCCC TGACCAAGGC ACGGACACCA CCCGCAACGC GCTGTACCGG
CGCATCACCC TGCGGCTGAT TCCGTTCATT TTCATCTGCT ACCTGTTCAA CTACCTGGAC
CGCGTCAACG TCGGCTTTGC CAAGCTGCAG ATGCTCGACG CCCTTAAGTT CAGCGAAACG
GTGTACGGCC TTGGCGCTGG CATCTTCTTC ATCGGCTACG TCTTGTGCGG TTTGCCGAGC
AACCTGGCGC TCAACCGCTT TGGCCCACGG CGCTGGATCG CGCTGATGAT GATCGCCTGG
GGCAGCCTCT CCACCTGCCT GCTGTTCGTC ACCACCCCAA CCGAGTTCTA CACCCTGCGC
CTGCTCACCG GTGCCGCCGA AGCCGGCTTC TTCCCGGGTG TGGTGCTGTA CCTCTCGCGC
TGGTTCCCGG CGGCCCGACG CGGGCGCATC ATGGCCCTGT TCATGTCGGC GATCCCGGTG
TCGGGCCTGC TCGGCGGGCC GTTCTCCGGC TGGATTCTCG AGCACTTCGC CGCCGGCCAG
CACGGCCTGG CCGGCTGGCA GTGGATGTTC CTGATCCAGG GCTTGCCAAC TGTTGCACTG
GGCGTACTGG CGGTGTTCCT GCTCAGTGAC GGCTACCAGA AAGCCACCTG GCTGAGCCCG
AGCGAACGCC AACTGATCGC CGCCGACCTG GAGGCCGATG CCGCCAGCAA GCCGACCACC
ACCGGTGACA GCGTGCTGGC GGTGTTGACC AACCCGCTGA TCTGGACCTT TGGCTTCGTC
TACTTCTGTA TCCAGAGCGG CGTGTACGCG ATCAACTTCT GGCTGCCATC GATCATCAAG
GGCATGGGCT TCGACAACCC GCTGCTGATC GGCTGGCTCA GTGCCATCCC GTACCTGCTG
GCCGGTGTGT TCATGATCCT TTGCGGGCGC TCGGCAGACC TGCGCAACGA ACGCCGCTGG
CACCTTGTGG TGCCGATGCT GATGGGTGCC GTCGGCCTGT TGATTGCGGT GAACTTTGCG
GCTAACCCCA CCATCGCCAT TCTTGGCCTG TCGATCGCCA CCATGGGCGC GCTAACCGGC
CTGCCGATGT TCTGGCCAAT GCCAACCGCG TTACTCAGTG CCGGTGCAGC GGTCGCGGGC
CTGGCGTTGA TCAACTCGGT GGGCCAGATG GCCGGCTTCC TCAGCCCTTA CCTGGTGGGC
TTCATCAAGG ACCAGACCGG CTCCACCGAC GCCGCGCTGT ATTCGCTGGC GGCGCTGATC
GTGCTGGGTA GCCTGGTGGC CTTGCGCGTT ACCCGCGCGG GTGCGTTGAA TACTGCACGG
GCCAATTGA
|
|---|
| Protein sequence | MAHSPAPDQG TDTTRNALYR RITLRLIPFI FICYLFNYLD RVNVGFAKLQ MLDALKFSET
VYGLGAGIFF IGYVLCGLPS NLALNRFGPR RWIALMMIAW GSLSTCLLFV TTPTEFYTLR
LLTGAAEAGF FPGVVLYLSR WFPAARRGRI MALFMSAIPV SGLLGGPFSG WILEHFAAGQ
HGLAGWQWMF LIQGLPTVAL GVLAVFLLSD GYQKATWLSP SERQLIAADL EADAASKPTT
TGDSVLAVLT NPLIWTFGFV YFCIQSGVYA INFWLPSIIK GMGFDNPLLI GWLSAIPYLL
AGVFMILCGR SADLRNERRW HLVVPMLMGA VGLLIAVNFA ANPTIAILGL SIATMGALTG
LPMFWPMPTA LLSAGAAVAG LALINSVGQM AGFLSPYLVG FIKDQTGSTD AALYSLAALI
VLGSLVALRV TRAGALNTAR AN
|
|---|
| |