| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2671 |
|---|
| Symbol | |
|---|
| ID | 5870459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2993990 |
|---|
| End bp | 2994889 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641547792 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001668904 |
|---|
| Protein GI | 167033673 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0656105 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAA CACGTTTGCT GAGGCAGTTC ATCGCCGTGG CCGAAGAGCT GCATTTTCAC
AAGGCCGCCG AGCGCCTGCA CATGGCACAA CCGCCATTGA GCCAGGCAAT CAACCGGCTC
GAGGAAAAGC TCGGTTTTGG CCTGTTTCTG CGCAACAAGC GCGGTGTTCG TCTGACGGCG
GCAGGTACAG CTTTTCTAGA TACGGCTTAC CGCACGTTGG CTGAGTTGGA ACAGGGGATC
GAGTACGCCC GCAATGTGTC CGCGGGGGTC AGCGGCAAGC TGACCATCAC AGCCATTTCC
ATCGCCTATT ATGACTCGCT GCTCAGCAGC CTGCGCAGCT TTCGCGAGAC CTATCCAAAC
GTGCAACTGA CCATCCGCGA GATGCCATCG GCCTCGCAGG CCAAAGCGTT GCTGGCCGGC
GAGGCGGACA TCGGCTTCAT GCGCAGGTTG CCGCTGCCGG TGGGCACCCT TGAAGCACGG
TTGCTGCTTG ACGAGCAGAT CGTCATGGCC CTGCCCGCAA GCCATCCGAA GGCTCAGCAC
GAAGAAATCG ACCTGCGCGA GTTTGCCGAG GAAGACTTCG TCTTTACCCC GCAAGCACTG
GGCGGCGGCT ATCACGCGCA GTTGGTTGCC CTGTGCGAGG CGGCGGGTTT CTACCCAAAG
GTGGTACAGG AGGCCGCGCA GATCCATACC CTGCTTGGCC TGGTGGCTTG CGGTTTTGGC
GTGGCGCTGG TGCCGGAATC GTTTGCCAGT TCAACGCCGC GCGAGCGCGT GCGGTTTCGC
CCGATCCGGC CGATCGATGA TCAACCGGCC CCAGGCCTTG GGCTGTACAT GAAGTGGAGC
GCCCAGAACG CTTCGCCGGC GCTGGCCAAC TTCATTGCCA TGTTCAACAC GCAGGCATAA
|
|---|
| Protein sequence | MIETRLLRQF IAVAEELHFH KAAERLHMAQ PPLSQAINRL EEKLGFGLFL RNKRGVRLTA
AGTAFLDTAY RTLAELEQGI EYARNVSAGV SGKLTITAIS IAYYDSLLSS LRSFRETYPN
VQLTIREMPS ASQAKALLAG EADIGFMRRL PLPVGTLEAR LLLDEQIVMA LPASHPKAQH
EEIDLREFAE EDFVFTPQAL GGGYHAQLVA LCEAAGFYPK VVQEAAQIHT LLGLVACGFG
VALVPESFAS STPRERVRFR PIRPIDDQPA PGLGLYMKWS AQNASPALAN FIAMFNTQA
|
|---|
| |