| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2670 |
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| Symbol | |
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| ID | 5870458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2992138 |
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| End bp | 2993862 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641547791 |
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| Product | SMP-30/gluconolaconase/LRE domain-containing protein |
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| Protein accession | YP_001668903 |
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| Protein GI | 167033672 |
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| COG category | [G] Carbohydrate transport and metabolism
[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3386] Gluconolactonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.142476 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTTA CAGACCCTTT CCACAATAAA GTTGCGGTCA TTACAGGTGC CGCACAGGGC
CTGGGCCTGG CCTACGCCAT GGCGTTGGCC GAACGCGGCG TGCGGGTAGT GATCAGCGAC
CTGGGCACCG ACCGTTCGGG GCAAGGGCAG GACGCCTCGG CGCTCGAGCA CGCACTGGCG
GCCATGCGCG CCAAGGGCTT CGCGGTGGTT GGGCACGCAG GGCAGCTGGA AAACGAGGCC
GCCTGCAAGC AACTGGTCGA GCTGGCCGTC GCGCATTTCG GTGCGCTGGA CATCCTCATC
CACAATGCCG GTTGGGTCGA CTATCAGCGT ATCGAGGCCC AGGACGACGC CTTCTTGCAG
CGCGCCTTGG GCATCAACGT GCAGGCACCG GTGTGGCTGG CCAAGCATGC CTGGCCACAC
CTCAAACGCT CCGCAGCACC GCGGATAGTG CTGACCACCT CCGACCGCGC CATGTACCAA
CGCTATGCCC AGCCTGGCCT GGTGGCCTAT GCCGCTGGCA AGATGGCCCA GGTCGGTATC
ATGAACGCCC TGAGCATGGA GGGCCAGGAG CACGGCATCC TGGTCAATGC CATTTCACCG
GTGGCCAAGA CCCGCATGTG GGGCATCAGC CAACCGCCAG AAGAGCTGAA ACCCGAGTGG
GTGACGCCGG GCGTGCTGTA CCTGGCCAGT GCGCTGTGCC ATGACACGGG TTACATCTTG
CGCGCCAGCA ACGGCCAGTT CACCGCCACA CGTTTCAACG AAAACAGCGG CGTCAGCTAC
CCCCGAGACC TGGGCCGTGT GCAGGCCAGC GACCTGGCGC AGGTGGCCGA GCGCTGGAAC
CGCATCAAGG AATGCAACTA CGTGCCAGTC AAAGTCGCCA ACACGCGCGC GGACTTGGGT
GAAAGCCTGG TCTGGGATGA GCGCAGCGGC GTGTTGTACT TCGTCGATAT TTCTGGCGGG
CGCATCAACT GCCTGACGCC CGATGGTGAA GTCGAGAGCC TTTACGAATC AGCCGCCCGC
ATTGGCGCCC TGGCACTGAC CGACCGGGGT AACCTGATCT TCACCGAAGA TGCCAGCGTG
GCCATCTTCG ATGTGCCATC ACGCAAGGTG TGTCAGCATT CGGCATCGGT CCATCCACGC
TCGACCTACC GTTTCAACGA CGGCGCCTGC GACCCGCAAG GCCGCTTCGT GACCGGGTTG
ATGGACGATG CCTACAGTGG CAATACCGGG GCATTGTTCC GCTTCGACGG GCAGTTGAGC
GACCAGGTGA TCCACGACGA CATAGCGTTG CCCACTGGCA TTGCCTGGTC GCAGGATGGC
CACACGGTGT ACTTCGTCGA TTCGGCGGCG CGTGCGATCT ACCGTGCCGA GTACCTCGTC
GAGGGCCGGC TGGGCGAGGT TACGCTGTTT GCCGAAACGC CCGCCGAACT GGGGCGGCCG
GATGGCTTGG CGCTGGACCG CGACGGTGGG TTGTGGGTGT GCCAGTACCA TGGCAGTTGC
CTGCTGCACT ACGATCGTCA CGGCCACCTG ACCGACCAGG TGTTGATGCC GGTGCCGTGC
CCCACCAGTT GCTGCTTTGG CGGCCCGGGG ATGAACACCT TGTACATCAG CACCGCGCGC
TTCGACATGA GCCCCGAAGA CCTGCACCAC TATCCCGATG CTGGCGACCT TTATGCCATA
CGCCCGGAAA CGGGCGGCGT GGCCCGGCAC AGCTTCAAGG AATAA
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| Protein sequence | MPVTDPFHNK VAVITGAAQG LGLAYAMALA ERGVRVVISD LGTDRSGQGQ DASALEHALA
AMRAKGFAVV GHAGQLENEA ACKQLVELAV AHFGALDILI HNAGWVDYQR IEAQDDAFLQ
RALGINVQAP VWLAKHAWPH LKRSAAPRIV LTTSDRAMYQ RYAQPGLVAY AAGKMAQVGI
MNALSMEGQE HGILVNAISP VAKTRMWGIS QPPEELKPEW VTPGVLYLAS ALCHDTGYIL
RASNGQFTAT RFNENSGVSY PRDLGRVQAS DLAQVAERWN RIKECNYVPV KVANTRADLG
ESLVWDERSG VLYFVDISGG RINCLTPDGE VESLYESAAR IGALALTDRG NLIFTEDASV
AIFDVPSRKV CQHSASVHPR STYRFNDGAC DPQGRFVTGL MDDAYSGNTG ALFRFDGQLS
DQVIHDDIAL PTGIAWSQDG HTVYFVDSAA RAIYRAEYLV EGRLGEVTLF AETPAELGRP
DGLALDRDGG LWVCQYHGSC LLHYDRHGHL TDQVLMPVPC PTSCCFGGPG MNTLYISTAR
FDMSPEDLHH YPDAGDLYAI RPETGGVARH SFKE
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