| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2667 |
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| Symbol | |
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| ID | 5870455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2987945 |
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| End bp | 2990272 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547788 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001668900 |
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| Protein GI | 167033669 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.472335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.953332 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATACGCC GTTCGCTTTC CTCTTCCAGC CTTTTGCGGC TGCTGATCCT GATGCTCTGT
GCAGCGACCC TGGCCTTTCT CTGGGGGTTG CACGTTACGC AGAAAGCCGC CGCCCGCCAG
GATGCGTTGT CGGCCAAGGC CGCCGAACAC CTGAACCTGG CCAGTATTGT CGGCGAAAGC
CTGCGCCAGC TGGTTGACCG TGCCCAAGCG GTGGGCCGGG TTACCCAGGA CGACATGAAA
GTGCTGCGTC AAGGTAACTT CAGCCTGGCG CGTATCCTGG CTGAAGACCC GGTGTTCAAG
CGCATGAGCC TGTACGATCG GCAAGGCCGG CTGCTGTCGG CCAGCCATGC CGACGAGGTC
GCCGAGTTAC CTGCCGATTG GTTGCGCCAG TTGCGGCGCC ATGCAGGTCG CTACGGTTTC
AAACCCTTCC TGCCAAGCAT TCAGCCCCCC GGCCAACCCA CCGCCCTGCC CACTTGGCGC
TTGCCCTTTC TGCTGCCGCT GACCGACCCG GCCGGCCGAG AAATCGACAA CATCCTGGTC
GTGCAACTGG ATATTGGGCA CCTGGCAGTG CTGTTCCAGC ATATCGACCT GGGCAGCAGC
GGCCTGGTGC GCCTGCTGCA GGAAGACGGC CTGGAGCGGC TGCGCATCGA TACCAGCGGC
GTGGTGGTGG CTGGCGATTC ATTGCAGCCC GAGCTGCCTG GCACTGACAC TGAAGCGGGC
ATGATGACCC AGTACGTGGC GGGCGACGCT TACCAAAGCC TGTACCGCCA TGTACCTGAG
CGCGGCTTCA GTGTGGTGGT CAGCCAGCGC CAGGATGAAA TCCTCGCCCC CTCGGCGCTG
GCCTATTCCC GGCAGTTCTG GTTGAACCTG AGCATGACAC TGATGATTCT TGCCAGCCTG
CTATGGACCT TGCGCCTGCT GCGTAAACGC CAGGAGGCAT TCGATGCGCT GGAACATGCC
CAGCAGGTCA ACCAGCAACT GATCGGGCGC CTCGAGGACG AACACCGGCG CAGCAGCCAT
GCCGCCGCCA CCGACCACCT GAGTGGCCTG CACAACCGCC GCCAGTTCGT CGAGGTGGCC
GGCCAGGCGC TGACGCGACA GCGTGGCAAG CGCCGGCTGA TGGCGATCCT GTTCATCGAC
ATGGACCGCT TCAAGTCGAT CAACGATTCG CTGGGGCACA AGATTGGCGA CCTGCTGCTA
CAAGCTGTGG CCGGGCGCAT TCAGCGGCTG CTGGAACCCG GTGACGAGGC TTCGCGCTTT
GGCGGCGACG AATTCGTGGT GCTGTTGGCC GGCGAGCGCA GCGAAGAGCA GATCAACGCC
TGGGTTCGCG AACTGGTACA AAAACTGTCA GCCACTTACG CCCTGGATGG TCAGGAGGTC
AACACCAGCC CAAGCGTTGG GGTGAGCATT TGCCCACGCG ATGGCCAGGA TATCGACAGC
CTTATCCGCA GCGCCGACGC CGCGATGTAT TCGGCCAAGC AGGCCGGGCG TGCGCAATAC
CGCTTCTTCG ACCCTTCGCT GAACCTGGCC GACATCCAGG CCTTCACCCT CGAGCAGGCA
TTCGGCAGTG CCCTGGCCGA ACGCCAGTTC GTGCTGCACT ACCAGCCACA GATTCGCCTC
GACACCCAGC AGGTATTGGG CTACGAAGCC CTTGTGCGCT GGGACCACCC AGAGTTCGGC
TTGCTGTACC CGGACCGCTT CATCGACCTG GCCGAGCGCA GTGGTTTCAT CGTCGAACTG
GGCTGGGAGG TGCTGCGCCT GGCCTGTGAA GCGTTGTCGA GCTGGGATGC CCAGGGCCGG
GAAACTCGGC TGGCAGTCAA TGTATCCGCG CTGCAGTTGC GCCAAGGCGA CTTCGCTGCC
CGCCTGCTGA GCCAATTGCA GCATCACGGC ATCGCGCCGC AGCAGTTGGA GCTGGAAATT
ACCGAAACCA CCATCCTCGA CCCCGAAGGC ACGGCGGTGA CCCATCTGCA CACCCTGCGC
GGTGCGGGCC TGGGCATCAG CCTGGACGAT TTCGGCCGCG GTTACGCCGG TTTTGCCCAC
CTGCACTCGC TGCCGCTAAG CAAGCTGAAG ATCGATCGGT CGCTGATTGC GGCACTGTCC
AACAGCCATG ACGACAGCCC TATCGTGTCC TCCACCATCA TCCTGGCCAA ACGCCTGGGC
CTGGAAGTGG TGGCCGAGGG TGTCGAAACC CGTGAGCAGG TGGTGTACCT GAAGCTTGCC
GGCTGCGATA TCGCCCAGGG CTATCACTTC AGCCGACCGC TGTCGCCGGC ACAGTTATGC
GATTACCCGC CCTTCAACGG CGTCGAGGAC AAGGCATGCG TGTACTGA
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| Protein sequence | MIRRSLSSSS LLRLLILMLC AATLAFLWGL HVTQKAAARQ DALSAKAAEH LNLASIVGES
LRQLVDRAQA VGRVTQDDMK VLRQGNFSLA RILAEDPVFK RMSLYDRQGR LLSASHADEV
AELPADWLRQ LRRHAGRYGF KPFLPSIQPP GQPTALPTWR LPFLLPLTDP AGREIDNILV
VQLDIGHLAV LFQHIDLGSS GLVRLLQEDG LERLRIDTSG VVVAGDSLQP ELPGTDTEAG
MMTQYVAGDA YQSLYRHVPE RGFSVVVSQR QDEILAPSAL AYSRQFWLNL SMTLMILASL
LWTLRLLRKR QEAFDALEHA QQVNQQLIGR LEDEHRRSSH AAATDHLSGL HNRRQFVEVA
GQALTRQRGK RRLMAILFID MDRFKSINDS LGHKIGDLLL QAVAGRIQRL LEPGDEASRF
GGDEFVVLLA GERSEEQINA WVRELVQKLS ATYALDGQEV NTSPSVGVSI CPRDGQDIDS
LIRSADAAMY SAKQAGRAQY RFFDPSLNLA DIQAFTLEQA FGSALAERQF VLHYQPQIRL
DTQQVLGYEA LVRWDHPEFG LLYPDRFIDL AERSGFIVEL GWEVLRLACE ALSSWDAQGR
ETRLAVNVSA LQLRQGDFAA RLLSQLQHHG IAPQQLELEI TETTILDPEG TAVTHLHTLR
GAGLGISLDD FGRGYAGFAH LHSLPLSKLK IDRSLIAALS NSHDDSPIVS STIILAKRLG
LEVVAEGVET REQVVYLKLA GCDIAQGYHF SRPLSPAQLC DYPPFNGVED KACVY
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