| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2635 |
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| Symbol | ligD |
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| ID | 5870424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2951369 |
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| End bp | 2953870 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547758 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001668870 |
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| Protein GI | 167033639 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.232561 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.576376 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGC CCCTGCAGGA ATATGCGCGC AAGCGTGACT TCAGCGCCAC GCCCGAGCCA
GACGGCAGGC GCAGCCGTGG TAAACAGGCC CACGCCCTGC TGTTCTGCAT CCAGAAGCAT
GACGCCAGCC ACCTGCACTA TGACTTCCGC CTGGAGCTTG ATGGCACCCT GAAGAGCTGG
GCGATCCCCA AGGGGCCGTC GCTGGACCCC AAGGTGCGCC GACTGGCCGT GCATGTGGAG
GACCATCCGC TGGACTACGC CGACTTCGAG GGGCATATCC CCGAAGGCCA CTATGGTGCA
GGCGATGTGA TCGTTTGGGA CCGTGGCATA TGGGAGCCCG AGGGCGATGC CCGTGAGGCT
TATGCCAAAG GCAAGCTGCG CTTTCGCCTG CAGGGTGAAA AGCTCAGTGG TGTGTGGAAC
CTGTTTCGCA CCCACCTGGC CGGCAAAAAG GAGCAATGGA TGCTGGTGAA GTCCCACGAT
GGCCAGGCGC GCAGCGAAGC TGACTACAGC ATTGTCGAGG CCCAGCCTGA CAGCGTGCTC
AGCGACCGCA CCTTGTTGCC ACGCAAGGCC GCTGCAAAAA AGGCCACTAC ACCGCGCACC
AACCGTCAAC GCACCGGAAA AGGCCAGCAT GCGCCGTTGC CAGCGCAGCT ACAGCCGCAG
CTTGCAACGT TGGTGGATTC CCCGCCTAGC GGCGACTGGC GCTATGAAGT CAAGTTCGAC
GGCTACCGCA TCATGGCCCG CATCGACGGC GAAGATATCC GCCTGTTCAC CCGCAATGGC
CACGACTGGA GCAGCAAAAT GCCCCGGCAG GTCGCTGCCT TGCGCGCGCT GGGTGTCGGT
TCGGCCTGGC TCGACGGCGA AATGGTGGTG GTTGACGAAA ATGGCGCAGC AGACTTCCAA
GCCTTGCAGA ACGCCTTCGA TACCGAGCAT GACGAAGGCA TTGCCTATTA CCTGTTCGAC
CTGCCGTTTC TTGGTGGTCG GGACCTGCGT CAGGTACCGC TGCAGGGCCG CCGCGACACC
TTGCGCCAAC TGCTTGGGCA CGATGAGTCG GACGTACTCA AGTTTTCTGC CGACTTTGAC
CAGCCTGTCG AATCCCTGCT CGACAGCGCC TGCCGTCTGC AGCTCGAAGG GCTGATCGGC
AAACGCGTCG ACAGCCCGTA CAGTGGCCGC CGCAGCTCGG ACTGGGTCAA GCTCAAGTGC
AAGCAACGCC AGGAATTCGT GATCGTCGGC TACACCGACC CCAAAGGCAG CCGCAGCGGC
TTCGGGGCCT TGCTGCTGGC TCTGCACGAC AACGACAGTG GTGAGCTGCG CTATGCCGGA
AAGGTAGGTA CCGGCTTCAG TGATACCACC CTGGCCACCC TGCTTGCCCG GTTGACGTCT
CTGGAAACTG CCAAGCCAGC CGTGGCCAGG CCGCCCACCG GTGCCGAAGC CCGTGGTGTG
CATTGGCTGC AACCGAAACT GCTCGCTGAA GTCGCCTATG CCCAGATGAC CCGTGATGGC
ATCGTACGCC ACTCGGTTTT CCACGGCCTG CGCGACGACA AGGCGGCAAC AGCTATCGAC
CTGGAGCGCG CCATGCCCGC CAAGACCGTG CCTAAGCGCA GCAAGCAGGC CAAGACGTCT
GAAACCCCGG ATGAACTGCA CCTGACACAT CCTGACAGGG TGATCGACGC CACCCTGGGT
GCGACCAAGC GCGAAGTCGC CGAATACTAT GCCGACATCA GCCAATGGAT CCTGCCACAG
CTCAAGCACC GCCCGGTGGC GCTGGTTCGC GCACCGGACG GCCTGGCCGG CGAGCTGTTC
TTCCAAAAGA ACGCGGGCCA GCTGCACATA CCCAACGTGC TTAGCTACGA AAAGGCCGAG
GCCGGCCAGG CGGCGATGGT TATCAATCGC CCAGACACGC TGCTAGGCGC GGTGCAGATG
AACATGCTTG AACTGCACAC CTGGAACGCC ACGGACAAGG ACTTCGACAA ACCCGACCGC
TTCGTGCTCG ACCTGGACCC TGACCCCGCG TTGCCCTGGA AGGCCATGCT GGAGGCGACT
CAGCTCACCC TTACCCTGCT TGACGAGCTA GGCCTGAAGG TGTTCCTGAA AACCAGTGGA
GGCAAAGGCA TTCATGTTGT AGTGCCGTTG ACCCGGCGCG CCGGCTGGGA CGAAGTCAAA
GGCTTCAGCC ACGCCATCGT CAACTATCTG GCCACGTTGT TCCCGGACCG TCTCAGCGCG
GTGTCTGGGC CGAAAAACCG TGTTGGGCGC ATCTTCATCG ATTACCTGCG CAACAGCAAA
GGCGCCACCA CCGCGTGCGC TTACTCCCTG CGAGCCCGAG AGGGGCTGCC TGTTTCGGTG
CCCATATGGC GCGAGGAGCT GGTGCAGCTC AAGGCCGCCA ACACGTGGAA CATCGCCAAC
GTGCGCGAGC GTCTCGCAGC AGTCGAAGAC CCATGGGCCG ACCTGGGCAA GGTGCGTCAG
TCCATCACTG CCCGCATGCG CAAGCAACTG GGGCTCTCGT GA
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| Protein sequence | MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR LELDGTLKSW
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAREA
YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK EQWMLVKSHD GQARSEADYS IVEAQPDSVL
SDRTLLPRKA AAKKATTPRT NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD
GYRIMARIDG EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ
ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES DVLKFSADFD
QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC KQRQEFVIVG YTDPKGSRSG
FGALLLALHD NDSGELRYAG KVGTGFSDTT LATLLARLTS LETAKPAVAR PPTGAEARGV
HWLQPKLLAE VAYAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS
ETPDELHLTH PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA TDKDFDKPDR
FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK
GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR IFIDYLRNSK GATTACAYSL RAREGLPVSV
PIWREELVQL KAANTWNIAN VRERLAAVED PWADLGKVRQ SITARMRKQL GLS
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