Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2625 |
Symbol | |
ID | 5870414 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2942625 |
End bp | 2943857 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547748 |
Product | outer membrane porin |
Protein accession | YP_001668860 |
Protein GI | 167033629 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0951208 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.228202 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCA CGCACTTCAT GTCAGCCGCC TGGCTGGCCA CCCTCGCCCT GCCAATGCCG GCGCTGGCGG ACTTCATCGG CGACAGCCAT GCACGCCTGG AGCTGCGCAA CCACTACATC AACCGCGACT TCCGCCAAAG CAATGCGCCC CAGGCCAAGG CCGAGGAATG GGGCCAGGGC TTCACCGCCA AGCTGGAGTC GGGCTTCACC GAAGGCCCCG TCGGCTTTGG CGTCGACGCC ATGGGCCAGT TGGGCATCAA GCTCGACTCC AGCCGGGACC GTCGCAACAC CGGCCTGTTG CCCTTCGGCC CGAACAGCCA TGAACCCGTC GACGACTACA GTGAGTTGGG CCTGACCGGC AAGGTGCGGG TGTCCAAAAG CACCCTGCGC CTGGGCACCT TGCAGCCGAT TCTGCCGGTG GTGGTGTACA ACGACACCCG ACTGCTGGCA TCCACCTTCC AGGGTGGCCT GCTGACCAGC CAGGACCTCG AAGGCCTTAC TTTCAATGGC GGCCGCCTGA CCAAGGCCAA CCTGCGCGAT TCCTCGGGCC GCGATGACAT CGGCTACGGC GCCGCGACCA GCGACCACCT GGACTTTGGT GGTGGTAGCT ACGCCATCAC CCCGCAAACC AGCGTCAGCT ACTACTACGC CAAGCTTGAG GACATCTATC GCCAGCAGTT CGTCGGCCTG ATCGATACCC GCCCATTGAG TGAAGGGGTG AGCCTGCGCA GCGACCTGCG CTATTTCGAC AGCCGCAATG ATGGCGCCGA GCGTGCCGGC AACATCGATA ACCGCAACTT CAACGCCATG TTCACCCTGG GTGTACGGGC GCACAAGTTC ACCGCCACCT GGCAGCAGAT GTCCGGTGAC AGCGCCTTCC CGTTCGTCAA CGGTGGCGAC CCGTTCACCG TCAACCTGGT CACCTACAAC ACCTTCACCC GGGCCGGGCT GGACTCGTGG CAAGTGCGCT ACGACTACGA TTTCGTTGCC ATGGGTATCC CTGGCCTGAG CTTCATGTCC CGTTACACCG ACGGCCGCCA TGCGCAAACC GCCACCGTCA GCAATGGCCG CGAGCGCGAG CGCGATACCG ACATCACCTA TGTCATCCAG AGCGGCCCGT TCAAAGACGT CAGCCTGCGC TGGCGCAACG TCACCTTCCG CTCCGGCAAT GGCCTGACCA ACGCCGTTGA CGAGAACCGC CTGATCATCG GTTACACCCT GGCGCTGTGG TAA
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Protein sequence | MNRTHFMSAA WLATLALPMP ALADFIGDSH ARLELRNHYI NRDFRQSNAP QAKAEEWGQG FTAKLESGFT EGPVGFGVDA MGQLGIKLDS SRDRRNTGLL PFGPNSHEPV DDYSELGLTG KVRVSKSTLR LGTLQPILPV VVYNDTRLLA STFQGGLLTS QDLEGLTFNG GRLTKANLRD SSGRDDIGYG AATSDHLDFG GGSYAITPQT SVSYYYAKLE DIYRQQFVGL IDTRPLSEGV SLRSDLRYFD SRNDGAERAG NIDNRNFNAM FTLGVRAHKF TATWQQMSGD SAFPFVNGGD PFTVNLVTYN TFTRAGLDSW QVRYDYDFVA MGIPGLSFMS RYTDGRHAQT ATVSNGRERE RDTDITYVIQ SGPFKDVSLR WRNVTFRSGN GLTNAVDENR LIIGYTLALW
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