| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2557 |
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| Symbol | |
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| ID | 5870346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2871193 |
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| End bp | 2873373 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641547680 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001668792 |
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| Protein GI | 167033561 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.482945 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0643046 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAGCC AATCCGATTT GCGCTTCACC TTCCAGCCGC TGGTGGGCCG TAGCGAGTTC
GAAGTGGTGT CGTTCGAGCT GGATGAAGCC ATCAGCACAC CATTCCAGTT GCAGCTGGAA
CTGATCAGTT TCGAAGACGC TGTCGACTTT GGCCAACTGC TCGACAAACC GGTGTTGTTC
ACCATTTGGC GTGGTGAGCG CCCGCTGCGC TATGTGCACG GCCTGGTCAG CACGTTTAGC
CAAGGTGAAA CGGGCTTCCA TCGCACCCGC TACCACGCCT TGGTCGAGCC CGTGCTGGCC
CGTGCGGGGT TGCGCTCGAA CTGGCGCATC TTCCAGCAGA AAACCGTATC GCAAATCCTC
GAAATCATGC TCAAGCGCCA GGGCGTGAAT GCGTACCAGC TCAAGTGCAT CGATCAGCAC
CAGGTGCGCG AATTCTGCGT GCAGGCCGGT GAAACCGACC TCGATTTCAT TGCTCGCCTG
GCCGCCGAAG AGGGCCTCGT CTACCGCTTC GAGCACACGC CGAAAGGCCA CACGCTGATC
ATCACCGACC GGCTGCTGGC GCTGGGGCAG ATCAGCCAGG GCGTCATCAA GGCCGACGAC
GAGGATGAAG GTTTCTTCGA ACAGGCTGAC ATCGACCCCA ACCAGGTGCT GTACCACGCC
AACAGTGCTG GCGATCAGGC AATACCCTGC CTGCGCCACC TGCGCTACAG CGAGCAGGTA
CGTACCGCGC GCCAGGTTCA GCGCGACCAC ACCTTCACCC ACCCGGCTTA TCGCCTGGAG
CTACGCGCCG AGGGCGGCGA CCTGGCGCAC CAGTCCACCG CCTACGAACG CTTCGACTAC
CCCGGCCGCT ACAAGCGCGA GGCGGTCGGC GTGCCTTTCA CCGCCACCCG CATCACGGCC
CTGCGCCATG ATGCCCGCAT GGCCGAGGTG GAAGGCGACG ATGTGCGCCT GCAACCGGGG
CTGAGTTTCA CCCTGATCGA GCACCCGCGC GAAGACCTGA ACCTGCATTG GCGGGTCACC
CGCGTGCACC ACGAGGGCAC CCAGTTCACC AGCCTGCAGG AAGAGGCAGC AGGTGCGCAG
CTAGGCACCC GCTACAAGCA GGACGCCGTG CTGGTCCCCG GCAGAACCGA ATGGCGCCCG
GCCCCCTTGC CCAAACCGCG CATCGACGGC CCGCACATGG CCACGGTGGT GGGGCCGAAG
GGCGAGGAAA TCTACTGCGA CCAATGGGGC CGGGTGAAGG TCAGCTTTCC TTGGGACCGG
GAGAGCGAAA ACAACGAGTT CAGCTCCTGC TGGGTACGCG TGTCGCAGGG CTGGGCCGGT
GGTAGCTGGG GTTCGATGGC CATTCCGCGC ATTGGCCAGG ACGTGATCAT CCAGTACGTC
AATGGCGACC CGGACCAGCC GATGATCACC GGGCGCACCT ACTGCGGCAA CCAGCTGCCG
CCCTATGACC TGCCCGAACA CAAGACACGC ATGACCATCA AAAGCCAGAC CCATAAAGGG
GATGGGTTCA ACGAACTGCG TTTCGAAGAC GAGTTAGGCA AAGAGGAAGT GTTCATTCAT
GCCCAGCGGG ACCAGAACAA TGTGGTCGGC AATGATGAGT CCACGCGAGT GGGCAACGAC
CGCACCGAAC GCGTCGAACG AGATGAGACA ATTTCGATTG GGCAGAATCG CCTCGAAGAC
GTTGCCCGGG ACGAGTCCGT CAGCATTGGC CAGAACCGAA CACACGAAAT TGGCAACGAC
GACAGCCTGA GCATTGGTCG CACCCATACC ATTATCACGG GCAAGGACCG AATCGAACAC
GTTGGGAATC AGCGACAGGA CATCACCAAG GCCAACCACA CGGTAGAAAT CGGCGGCCAC
CTCGAACAGG TCGTGGGCGG TCACAACACC TTGCAAACCG GCGAAGCCAT CCGGCACACC
ACCAAGGTCT ATGACATCCA GGTCAGTGAA AGCCTGACCA TCAGGAGCCC GGCGGGCCTG
CTGCGAATCG ATGGCGCCGG TATCACGCTG GACGGCCTGG CGCTGGCCTT CAAGGGGCCG
GTCAACCAGC AGGCAACCGG GAGTCATCGC ACCACTTCAA CACCTGGCGT ACCTGAGCCC
GGCGAACCCA TATGTCTCAG TTGCCTGCTG AAAGCGATCG CAGACGGCCA CAACATGATT
CGCATGGAAG GAGCAAGCTG A
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| Protein sequence | MSSQSDLRFT FQPLVGRSEF EVVSFELDEA ISTPFQLQLE LISFEDAVDF GQLLDKPVLF
TIWRGERPLR YVHGLVSTFS QGETGFHRTR YHALVEPVLA RAGLRSNWRI FQQKTVSQIL
EIMLKRQGVN AYQLKCIDQH QVREFCVQAG ETDLDFIARL AAEEGLVYRF EHTPKGHTLI
ITDRLLALGQ ISQGVIKADD EDEGFFEQAD IDPNQVLYHA NSAGDQAIPC LRHLRYSEQV
RTARQVQRDH TFTHPAYRLE LRAEGGDLAH QSTAYERFDY PGRYKREAVG VPFTATRITA
LRHDARMAEV EGDDVRLQPG LSFTLIEHPR EDLNLHWRVT RVHHEGTQFT SLQEEAAGAQ
LGTRYKQDAV LVPGRTEWRP APLPKPRIDG PHMATVVGPK GEEIYCDQWG RVKVSFPWDR
ESENNEFSSC WVRVSQGWAG GSWGSMAIPR IGQDVIIQYV NGDPDQPMIT GRTYCGNQLP
PYDLPEHKTR MTIKSQTHKG DGFNELRFED ELGKEEVFIH AQRDQNNVVG NDESTRVGND
RTERVERDET ISIGQNRLED VARDESVSIG QNRTHEIGND DSLSIGRTHT IITGKDRIEH
VGNQRQDITK ANHTVEIGGH LEQVVGGHNT LQTGEAIRHT TKVYDIQVSE SLTIRSPAGL
LRIDGAGITL DGLALAFKGP VNQQATGSHR TTSTPGVPEP GEPICLSCLL KAIADGHNMI
RMEGAS
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