Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2539 |
Symbol | |
ID | 5870328 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 2852019 |
End bp | 2852909 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641547662 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001668774 |
Protein GI | 167033543 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00516112 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAAATCG ATGACATGGA CGCCTTCGTG GCGGTCATCC GCTGCCAGTC GACCAACCTC GCCGCCGAGG CCCTGCAGCT GACTCAACCG GCCATCACCC GCCGCGTACA GAACTTCGAG GAAGACCTGG GCGCCACCCT GCTCGACCGC AACACCAAGC CTCTCAAACC GACCCCCATG GGCCTGCGCG TGTACGAACA GTGCAAAGCC ATTTTGCGCG AGATCGACTC GCTGCGCGAG CTGGTGGCCA ACGACGGAGC GCCTTCCGGG ACCCTGCGGC TGGGCGTGCC GCAAACCCTG GGTGATGTGG TGCTGCTCGA TGCCCTGGCG CAAATCCGCG AAACCTACCC GGACCTGCGC ACCCAGGTCA CCAGCGGCTG GGGCAGCAGC CTGATCGCGC GCATGGAAAA TGGCGAACTC GACGCTGCCG CTGCGCTGTT CCCGCCGGGC AAGATCTTCC CCGAGGGCAT CGCCAGCCAG TCGATCGCAC GCATGCCACT GCGGGTAGTT GCAGCCAAAG GCAGCACCGG CAAGCGCAGC CTCAAGCTCA AGGACTGCTA CACCCGTGGC TGGGTGCTCA ACCCCGATGG CTGCGGCTTC CGCGCGGGGC TGCAGCGCGC CCTGAGTGAA CAGGGGCTGA GCTTGTCGAT CAACCTGGAG ACCTTTGGTA CCGAGTTGCA ATTGGGGCTG GTGGCCAATG GGCAGGGGCT TGGCCTCGTG CCTGAGCCGT TGTTGCAGAA CAGCCGCCAT CGGGACGCGC TGGATGTGGT CAATGTAACG GACTTCAAGC CCCAGGTGGA TTTGTGGCTG TTCCACCCGC GCTACCTGGG CAACCTGCAG GAGCCGGTGG AGCTGTTTGG CCGGGTGGCC GGGCAACAGT TGTGTGGGTG A
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Protein sequence | MKIDDMDAFV AVIRCQSTNL AAEALQLTQP AITRRVQNFE EDLGATLLDR NTKPLKPTPM GLRVYEQCKA ILREIDSLRE LVANDGAPSG TLRLGVPQTL GDVVLLDALA QIRETYPDLR TQVTSGWGSS LIARMENGEL DAAAALFPPG KIFPEGIASQ SIARMPLRVV AAKGSTGKRS LKLKDCYTRG WVLNPDGCGF RAGLQRALSE QGLSLSINLE TFGTELQLGL VANGQGLGLV PEPLLQNSRH RDALDVVNVT DFKPQVDLWL FHPRYLGNLQ EPVELFGRVA GQQLCG
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