Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2507 |
Symbol | |
ID | 5870296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 2814560 |
End bp | 2815615 |
Gene Length | 1056 bp |
Protein Length | 351 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547630 |
Product | TPR repeat-containing protein |
Protein accession | YP_001668742 |
Protein GI | 167033511 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0800453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGAC GCAACCGCTA CCTGATCGCC CTACTGTCGT CGATTGTGGT ATTGGCCCTG TTCGGCTACC TGTGGCGTGA TGCCCCACCC GCGCAGCCTA CCTTGCCGGC ACACAGCTAC ACCAAGGCGC TACGCCAGGC ACACGACGGT CAGCCTGGAG CAGCACGGGT GCTGTACCAG CAATTGCAAC GTAACGACCT GCCCGCCATC CGCCGTGCGG CGCTGTACAC AGAGTTGCCC AACTACCCCT CGCCGCAGGC ATTGAAACTC GCCAGCCAGG ACCTGGAGCA TGGCGACCCG CTGGTGCGTC GTGCGGCCAT TGCGGGTATC CGTCGCCTGC TGCCGGCGGC GCAGCGCAGC CTGGTACTCG GCCCGCTGCT GGACGACGAC GACCAAAGCG TGCGCTTTGC CGCCGTGGAT GCCCTGCTAG GCCTCGATCC CGACGCCATC GGCCTGTACT TCGGCCCGCT TCAGGCAGCC CTTGAGCAAT ACCAGCAAGC CCTGGAACAG CAACCCGAGG ATGCCGACGC GCAGGTGCAC CTGGCGCGCC TGTACCTGCA TGAAAACGAC TACACCCAGG CCTCCACAGC ACTGCAACGC GCGCTGGCGG TTGACCCCGG CAACCTCGAC GCGCTGGCCA CTCAAGTGCG CCTGCTGGAA CGCCAGGGCC ATCACGACGC CTCACGCCAA GTACTGGGCA AAGCCTTGAC GTTGAGCCCT GACTCGGCCT TTCTGCAGTA CGAACTCGGG CTTTGGCTGA ACCGCCACGA GCAGCGCGAA TATGCCTTGC TGGCCCTTTC CCGCGCCGTC GAACTTGACC CGGACAACAC AGACTATCGC TATACGCTGG CGGTTACCCT GCACGAACTG GAGCAACTCG ATGCCGCGCA GAAGCAACTG GAAACCGTGC TCAATCGGCA ACCCGCCAAT CGTCGGGCGC GGGTATTGCT GATTCAGTAC TGGAAAGAAT CCGGCCAACT GCAGAATGTG CAGGTACTGC TGGCCGAACT GGAACGCCAG AACCCGGACG ATCCCGTATT GCAACAGGGC CTGTAG
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Protein sequence | MPRRNRYLIA LLSSIVVLAL FGYLWRDAPP AQPTLPAHSY TKALRQAHDG QPGAARVLYQ QLQRNDLPAI RRAALYTELP NYPSPQALKL ASQDLEHGDP LVRRAAIAGI RRLLPAAQRS LVLGPLLDDD DQSVRFAAVD ALLGLDPDAI GLYFGPLQAA LEQYQQALEQ QPEDADAQVH LARLYLHEND YTQASTALQR ALAVDPGNLD ALATQVRLLE RQGHHDASRQ VLGKALTLSP DSAFLQYELG LWLNRHEQRE YALLALSRAV ELDPDNTDYR YTLAVTLHEL EQLDAAQKQL ETVLNRQPAN RRARVLLIQY WKESGQLQNV QVLLAELERQ NPDDPVLQQG L
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