Gene PputGB1_2507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2507 
Symbol 
ID5870296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2814560 
End bp2815615 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content64% 
IMG OID641547630 
ProductTPR repeat-containing protein 
Protein accessionYP_001668742 
Protein GI167033511 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0800453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGAC GCAACCGCTA CCTGATCGCC CTACTGTCGT CGATTGTGGT ATTGGCCCTG 
TTCGGCTACC TGTGGCGTGA TGCCCCACCC GCGCAGCCTA CCTTGCCGGC ACACAGCTAC
ACCAAGGCGC TACGCCAGGC ACACGACGGT CAGCCTGGAG CAGCACGGGT GCTGTACCAG
CAATTGCAAC GTAACGACCT GCCCGCCATC CGCCGTGCGG CGCTGTACAC AGAGTTGCCC
AACTACCCCT CGCCGCAGGC ATTGAAACTC GCCAGCCAGG ACCTGGAGCA TGGCGACCCG
CTGGTGCGTC GTGCGGCCAT TGCGGGTATC CGTCGCCTGC TGCCGGCGGC GCAGCGCAGC
CTGGTACTCG GCCCGCTGCT GGACGACGAC GACCAAAGCG TGCGCTTTGC CGCCGTGGAT
GCCCTGCTAG GCCTCGATCC CGACGCCATC GGCCTGTACT TCGGCCCGCT TCAGGCAGCC
CTTGAGCAAT ACCAGCAAGC CCTGGAACAG CAACCCGAGG ATGCCGACGC GCAGGTGCAC
CTGGCGCGCC TGTACCTGCA TGAAAACGAC TACACCCAGG CCTCCACAGC ACTGCAACGC
GCGCTGGCGG TTGACCCCGG CAACCTCGAC GCGCTGGCCA CTCAAGTGCG CCTGCTGGAA
CGCCAGGGCC ATCACGACGC CTCACGCCAA GTACTGGGCA AAGCCTTGAC GTTGAGCCCT
GACTCGGCCT TTCTGCAGTA CGAACTCGGG CTTTGGCTGA ACCGCCACGA GCAGCGCGAA
TATGCCTTGC TGGCCCTTTC CCGCGCCGTC GAACTTGACC CGGACAACAC AGACTATCGC
TATACGCTGG CGGTTACCCT GCACGAACTG GAGCAACTCG ATGCCGCGCA GAAGCAACTG
GAAACCGTGC TCAATCGGCA ACCCGCCAAT CGTCGGGCGC GGGTATTGCT GATTCAGTAC
TGGAAAGAAT CCGGCCAACT GCAGAATGTG CAGGTACTGC TGGCCGAACT GGAACGCCAG
AACCCGGACG ATCCCGTATT GCAACAGGGC CTGTAG
 
Protein sequence
MPRRNRYLIA LLSSIVVLAL FGYLWRDAPP AQPTLPAHSY TKALRQAHDG QPGAARVLYQ 
QLQRNDLPAI RRAALYTELP NYPSPQALKL ASQDLEHGDP LVRRAAIAGI RRLLPAAQRS
LVLGPLLDDD DQSVRFAAVD ALLGLDPDAI GLYFGPLQAA LEQYQQALEQ QPEDADAQVH
LARLYLHEND YTQASTALQR ALAVDPGNLD ALATQVRLLE RQGHHDASRQ VLGKALTLSP
DSAFLQYELG LWLNRHEQRE YALLALSRAV ELDPDNTDYR YTLAVTLHEL EQLDAAQKQL
ETVLNRQPAN RRARVLLIQY WKESGQLQNV QVLLAELERQ NPDDPVLQQG L