| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2479 |
|---|
| Symbol | |
|---|
| ID | 5870268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2773289 |
|---|
| End bp | 2774962 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547602 |
|---|
| Product | acyl-CoA synthetase |
|---|
| Protein accession | YP_001668714 |
|---|
| Protein GI | 167033483 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.282098 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCAGC CAAGCTACTC CCAGGGCAAC CAGGACAAGG CCCTGCTTAC CCAGTGCATC
GGCGACGCCT TCGACGCCAC TGTCGCTCGC TTTCCCGAGC GCGAGGCGCT GGTGGTGCGC
CACCAGGCCC TTCGCTACAC CTGGCGGCAA CTGGCCGAGG CCGTCGACCA GCATGCTCGC
GCGCTGATGG CCCTGGGCGT GCAGCCCGGT GACCGCCTGG GTATCTGGGC GCCCAATTGC
GCCGAGTGGT GCATTACCCA GTTCGCCAGC GCCAAGGTTG GCGCAATCCT GGTCAACATC
AATCCGGCCT ACCGCTCCAG CGAGCTGGAC TATGCGCTCG GCCAGTCCGG CTGCCGTTGG
GTGATCTGTG CCGATGCGTT CAAGACCTCC GATTACCACG CCATGCTGCT GGGCCTTGTA
CCTGGCCTGG CCAGCGGTCA AGCGGGCGCG CTGATCTGCG AGCGTTTTCC CGAGCTGCGT
GGCGTGGTCA GTCTGGCCGT TGCGCCCCCA CCTGGGTTCC TCGCCTGGCA CGACCTGCAG
TCCCGCGCCG AGGCCGTCAG CCGCGAGGCC CTGGCCCAGC GGCAGGCACA ACTGCGCTGC
GACGATCCGA TCAACATCCA GTACACCTCG GGGACTACCG GCTTCCCAAA GGGCGCCACC
CTCAGCCACA GCAACATTCT CAACAACGGC TACATGGTGG GTGAAAGCCT GGGCCTGACC
GAACATGATC GGTTGGTAGT GCCGGTGCCG CTGTACCACT GCTTCGGTAT GGTCATGGCC
AACCTTGGCT GCATGACCCA CGGCAGCACC TTGATTTATC CCAACGATGC CTTCGACCCT
TTGGCTACCC TGCGCGCGGT GGCGGAGGAG AAAGCCACGG CGTTGTATGG CGTGCCGACC
ATGTTCATTG CCGAGCTGGA CCACCCGCAG CGCGGCGAGT TCGACCTGTC GAGCCTGCGC
ACGGGGATCA TGGCCGGCGC TACGTGCCCG ATCGAGGTGA TGCGCCGGGT GATTGGCGAG
ATGCACATGG CCGAGGTGCA GATTGCCTAC GGCATGACCG AGACCAGCCC GGTGTCGCTA
CAGACCTGCG CCACTGACGA CCTGGAGCGC CGCGTGACCA GCGTGGGGCG CACCCAGCCA
CGGCTGGAGA ACAAAGTGAT CGACAACGAC GGCGGCACAG TGCCGCGCGG TGAGATTGGC
GAGCTGTGCA CGCGTGGCTA CAGCGTGATG CTGGGTTACT GGAACAACCC CAAGGCCACG
GCCGAGAGCA TCGATGAAGA CGGCTGGATG CACACCGGCG ACCTGGCAGT GATGGACGAA
CAAGGCTATG TGCGGATTGT CGGGCGCAGC AAGGACATGA TCATTCGCGG CGGTGAGAAC
ATCTACCCGC GTGAGCTGGA AGAGTTCTTC TTCACCCACC CAGCGGTGGC CGATGTGCAG
GTGATTGGCG TGCCGTGCAG CAAGTATGGC GAAGAGATCG TCGCCTGGGT GCGGCTGCAC
CCAGGGCATG CTGCCAGTGA AGAAGAACTG CGAGAGTGGG CCAAGGCGCG AATTGCGCAC
TTCAAGGTGC CCCGGTACTT CCGCTTTGTC GACGAGTTCC CGATGACGGT GACCGGCAAG
GTGCAGAAGT TCAGGATGCG CGAGATCAGC GTCGAGGAAC TGACTGCCAA TTGA
|
|---|
| Protein sequence | MPQPSYSQGN QDKALLTQCI GDAFDATVAR FPEREALVVR HQALRYTWRQ LAEAVDQHAR
ALMALGVQPG DRLGIWAPNC AEWCITQFAS AKVGAILVNI NPAYRSSELD YALGQSGCRW
VICADAFKTS DYHAMLLGLV PGLASGQAGA LICERFPELR GVVSLAVAPP PGFLAWHDLQ
SRAEAVSREA LAQRQAQLRC DDPINIQYTS GTTGFPKGAT LSHSNILNNG YMVGESLGLT
EHDRLVVPVP LYHCFGMVMA NLGCMTHGST LIYPNDAFDP LATLRAVAEE KATALYGVPT
MFIAELDHPQ RGEFDLSSLR TGIMAGATCP IEVMRRVIGE MHMAEVQIAY GMTETSPVSL
QTCATDDLER RVTSVGRTQP RLENKVIDND GGTVPRGEIG ELCTRGYSVM LGYWNNPKAT
AESIDEDGWM HTGDLAVMDE QGYVRIVGRS KDMIIRGGEN IYPRELEEFF FTHPAVADVQ
VIGVPCSKYG EEIVAWVRLH PGHAASEEEL REWAKARIAH FKVPRYFRFV DEFPMTVTGK
VQKFRMREIS VEELTAN
|
|---|
| |