| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2454 |
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| Symbol | |
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| ID | 5870243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2748337 |
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| End bp | 2750010 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641547577 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001668689 |
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| Protein GI | 167033458 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGAAG CATTCGATGC AGCAGTCTCA GCCTACCCCC GCGACCTGCT GGCCCAAGCC
CGGCTGCAAG CCAGTGATGA GCGCCTGCTC AACTGCCTGG AACGCCTGGC CTGCGACACC
CCCGACACCT TCACCCGCCG CCTGGGCCTG ACCCTGTACT ACCCGGTACT GGACAGCCAC
ACCCTGCTGG CCAGCACCCC ACGCTTCGAC AAGGTGTCCT TGGCCCAGTG CCTGAAGCGC
GAATTCGTGC TGATCGAGCA AAACGGCCAG TTGCTGGGCG TGTTCGCCGA CCCCTTCGAC
CACACCCGCC TGGCCTGGAT CGACGACGTG CTGCAAGGCG CGCCGCTGTA CCTGGCCCAC
GCCGCCGAAC TGGCCACCTT TCTGGCCCGG CACGAAGAAA GCTTCCATGC AGTCGATGCC
CTGGACCACG ACCCCGAGGC CAGCAGCGAA AGCGACCCGC TGCAACGCCT GTCACTGGCC
AGTATCAGCG AAGACCAAAG CCGCGTGGTC AAACTGGTCA ACTCCACCCT GTACGATGCG
CTCAAGCTGC ACGCCAGCGA CATCCACCTG GGCATGACCG GCCAGGGCCT GACCATCAAG
TACCGTATCG ACGGCGTGCT CAACGGTGCC GGCAAAGCCA GCGGCAGCGC CTTTGCCGAC
CAGGTGATTT CGCGGATCAA GGTCATGGCC GAGCTGGACA TCGGCGAAAA GCGCGTGCCC
CAGGACGGGC GCTTCAAGGT CGCCGTGGGC GATCGGCAAA TCGACTTTCG GGTGTCGATC
ATGCCCAGCA TCTTCGGTGA GGACGCCGTA CTGCGGGTGC TCGACAAGCA GGACTTGTCC
GACCGGGTCA GCGGCGTGCA GTTGCAAGCC CTGGGCTTTG CCGACGAAAC CCTGCGCGCC
CTGCGCCGGC TGGCCGCCGA ACCTTACGGC ATGATCCTGG TGACCGGCCC CACCGGCAGC
GGCAAGACCA CCACCCTGTA CGCCATGATC AGCGAGATCA ACCACGGCGT GGACAAGATC
ATCACCATCG AAGACCCGGT CGAGTACCAA CTGCCCGGCG TGCTGCAGAT CCCGGTCAAC
GAGAAGAAGG GCCTGACCTT CGCCCGTGGC CTGCGCTCGA TCCTGCGCCA TGACCCGGAC
AAGATCCTGG TTGGCGAAAT CCGCGACCCC GACACCGCCC AGATTGCCGT GCAGTCGGCG
CTCACCGGCC ACCTGGTGTT CACCACCATC CACGCCAACA ACGTATTCGA CGTGATCGGC
CGCTTCAGCC AGATGCAGGT CGACCCCTAC AGCTTCGTTT CCGCGCTCAA TGCAGTGCTG
GCCCAGCGCT TGATTCGCCT GGCCTGCCCG CACTGCGCCA CGGCCTGCGA ACACGATGAC
GACACCCTGT ATGGCTCGGG CCTGACCCGC GAGGCCGTAG CCGGTTGGAC CTTCGTGCGC
GCCCAGGGCT GCGGCCAATG CCGGGGCAGT GGCTACCGCG GCCGCAGCGC CATTGCCGAA
CTGCTGCACC TGGACGACGA CCTGCGGCAA ATGATCGTGG AGCGCCGCCC CCTGGCGCAA
ATCAAGACGC TTGCCTGCCA GCGCGGCCTG CGCCTGCTGC GGGCCTCGGC CCTGGACCTG
GTCCGCGATG GCCGTACCAC CCTTGAGGAG ATCAACCGTG TCACATTCAT CTGA
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| Protein sequence | MSEAFDAAVS AYPRDLLAQA RLQASDERLL NCLERLACDT PDTFTRRLGL TLYYPVLDSH
TLLASTPRFD KVSLAQCLKR EFVLIEQNGQ LLGVFADPFD HTRLAWIDDV LQGAPLYLAH
AAELATFLAR HEESFHAVDA LDHDPEASSE SDPLQRLSLA SISEDQSRVV KLVNSTLYDA
LKLHASDIHL GMTGQGLTIK YRIDGVLNGA GKASGSAFAD QVISRIKVMA ELDIGEKRVP
QDGRFKVAVG DRQIDFRVSI MPSIFGEDAV LRVLDKQDLS DRVSGVQLQA LGFADETLRA
LRRLAAEPYG MILVTGPTGS GKTTTLYAMI SEINHGVDKI ITIEDPVEYQ LPGVLQIPVN
EKKGLTFARG LRSILRHDPD KILVGEIRDP DTAQIAVQSA LTGHLVFTTI HANNVFDVIG
RFSQMQVDPY SFVSALNAVL AQRLIRLACP HCATACEHDD DTLYGSGLTR EAVAGWTFVR
AQGCGQCRGS GYRGRSAIAE LLHLDDDLRQ MIVERRPLAQ IKTLACQRGL RLLRASALDL
VRDGRTTLEE INRVTFI
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