| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2352 |
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| Symbol | |
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| ID | 5870141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2630228 |
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| End bp | 2632645 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641547476 |
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| Product | PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein |
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| Protein accession | YP_001668588 |
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| Protein GI | 167033357 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.140873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAAA CACCGCGCGC CTCTGGCGCC CCAAACATCA TTCTGATCGG CCTGGGCGTA
ATCATCGCCC TGCTCGGCCT CCTCCTGGCT GCCGGCGGCG TCAAGCTCGC CGGCCTGGGC
GGGTCCTGGT ACTTCCTGAT CGGCGGCCTG GCCATGGCCA TCGCCGGTGT ACTCATTGCT
CGCCGCAAGC TGGCTGGCGC CTGGCTGTAT GCCGCATTCC TGATCGGCAC CGTGATCTGG
GCACTGAGCG ATGTCGGCCT GGTGTTCTGG CCGTTGTTCT CGCGCCTGTT CATGTTCGGC
GCAATCGGCA TGGTGGTGGC ACTGGTCTAC CCGCTGCTGG CGCGTACCAA CGGCGCCAGC
GCCGGTCGCG GTGCCTACGG TATCGCCGGG GTAATGGCGG TGGTGTTGGT GATCGCTGCC
GGCAACATGT TCGTTGCCCA CCCAAGCGTC GCCCCCACCG GCAAAGGCCC AGGCATGACC
CCGGTCGAAG CCGGCAAGGA ACAGAAAGAC TGGGCCCACT ACGGCAACAC CGAAGGTGGC
AGCCGCTTCG CCGCGCTGGA CCAAATCAAC CGGGACAACG TCAACAAGCT GAAAGTGGCC
TGGACCTACC ACACCGGTGA CGTCGCCATC AGTGACGGCA ACGGTGCCGA AGACCAGCTG
ACACCGCTGC AGATCGGCAA CAAGGTGTTC ATCTGCACCC CGCACAACAA CCTGATCGCC
CTCGATGCCG ACACCGGCAA AGAGCTGTGG AAAAACGCAA TCAACGCCCA GTCCAAGGTC
TGGCAGCGTT GCCGTGGCAT GGCCTACTTC GACGCCACTG CCGCCATCGC TCAGCCGACC
CAGCCGAACA GCTCGCCGAT TACCGGCGGT AGCGTAGCGG CGGGTGCCAA CTGCCAGCGT
CGCCTGCTGA CCAACACCAT CGATGGCCGC CTGATTGCCG TCGACGCCGA CACCGGCGAG
TTCTGCCAGG GCTTTGGCAA CAATGGCCAG GTCAACCTGA TGGCCGGCCT GGGCAATGTC
CCGGACTCCT ACTACCAGCT CTCCTCGGCA CCGCTGATGG CCGGTACCAC CGTGGTGGTT
GGCGGCCGCG TTGCCGACAA CGTCCAGACC GACATGCCAG GTGGCGTGAT CCGTGGCTTC
GACGTGATCA CCGGTGAAAT GCGCTGGGCC TTCGACCCGG GCAACCCGGA AGATCGCCAG
GCACCGCAAG GCGACAGCAC CTATGTGCGC AGCACGCCGA ACAGCTGGGC ACCGATGTCC
TACGACCCGG CGATGAACAC CGTGTTCCTG CCGATGGGCT CGTCGTCCAC CGACATCTAC
GGTGTTGAGC GCAACAAGCT GGACCACACC TACGGCGCTT CGGTGCTGGC CCTGGACGCC
ACTACCGGCA ACCAGAAGTG GGTATACCAG ACCGTGCACA ACGACCTCTG GGACTTCGAC
CTGCCGATGC AGCCAAGCCT GATCGACTTC ACCAAGGATG ACGGCCAGTC GGTACCTGCG
GTAGTGATCG GCACCAAGGC CGGGCAGATC TACGTGCTCG ACCGCGCCAC CGGTAAGCCG
TTGACCCAGG TCGACGAAGT ACCCGTCAAG CCAAGCAACA TCCCGAACGA GCCATACTCC
CCAACCCAGC CCAAATCGGT AGGCATGCCG CAGATCGGCG CACAGACCCT GACCGAGTCG
GACATGTGGG GTGCCACCCC GTATGACCAG CTGCTGTGCC GCATCGACTT CAAGAAAATG
CGCTACGACG GCCTGTACAC CGCGCCGGGC ACCGACCTGT CGCTGAGCTT CCCAGGTTCG
CTGGGTGGCA TGAACTGGGG CAGCATTTCC ACCGACCCGG TGCATGGTTT CATCTTCGTC
AACGACATGC GTCTGGGCCT GTGGATCCAG ATGATCCCGT CGCAGAACAA AGGTGGCGCG
GCCTCTGGCG GTGAGGCACT GAACACCGGC ATGGGCGCGG TACCACTCAA GGGCACGCCG
TATGCCGTGA ACAAGAACCG CTTCCTGTCG GTAGCGGGCA TTCCATGCCA GGCGCCGCCG
TTCGGCACCC TGACCGCCAT CGACATGAAA ACCCGCCAGG TGGCCTGGCA GGTACCCGTG
GGCACCGTTG AAGACACTGG CCCGCTCGGC ATCCGCATGC ACCTGCCGAT CAAGATCGGC
CTGCCAACCC TGGGCGGCAC CCTGTCGACC CAAGGCGGCC TGGTGTTCAT TGCCGGCACC
CAGGACTTCT ACCTGCGCGC CTATGACAGC AGCAACGGTA ACGAAATCTG GAAAGCTCGC
CTGCCAGTGG GCAGCCAGGG CGGCCCGATG ACCTACGTTT CGCCGAAGAC CGGCAAGCAG
TACGTGGTGA TCACTGCTGG CGGCGCCCGC CAGTCGACTG ACCGTGGCGA CTACGTGATT
TCTTACGCGC TGCCGTAA
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| Protein sequence | MKETPRASGA PNIILIGLGV IIALLGLLLA AGGVKLAGLG GSWYFLIGGL AMAIAGVLIA
RRKLAGAWLY AAFLIGTVIW ALSDVGLVFW PLFSRLFMFG AIGMVVALVY PLLARTNGAS
AGRGAYGIAG VMAVVLVIAA GNMFVAHPSV APTGKGPGMT PVEAGKEQKD WAHYGNTEGG
SRFAALDQIN RDNVNKLKVA WTYHTGDVAI SDGNGAEDQL TPLQIGNKVF ICTPHNNLIA
LDADTGKELW KNAINAQSKV WQRCRGMAYF DATAAIAQPT QPNSSPITGG SVAAGANCQR
RLLTNTIDGR LIAVDADTGE FCQGFGNNGQ VNLMAGLGNV PDSYYQLSSA PLMAGTTVVV
GGRVADNVQT DMPGGVIRGF DVITGEMRWA FDPGNPEDRQ APQGDSTYVR STPNSWAPMS
YDPAMNTVFL PMGSSSTDIY GVERNKLDHT YGASVLALDA TTGNQKWVYQ TVHNDLWDFD
LPMQPSLIDF TKDDGQSVPA VVIGTKAGQI YVLDRATGKP LTQVDEVPVK PSNIPNEPYS
PTQPKSVGMP QIGAQTLTES DMWGATPYDQ LLCRIDFKKM RYDGLYTAPG TDLSLSFPGS
LGGMNWGSIS TDPVHGFIFV NDMRLGLWIQ MIPSQNKGGA ASGGEALNTG MGAVPLKGTP
YAVNKNRFLS VAGIPCQAPP FGTLTAIDMK TRQVAWQVPV GTVEDTGPLG IRMHLPIKIG
LPTLGGTLST QGGLVFIAGT QDFYLRAYDS SNGNEIWKAR LPVGSQGGPM TYVSPKTGKQ
YVVITAGGAR QSTDRGDYVI SYALP
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