| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2344 |
|---|
| Symbol | |
|---|
| ID | 5870133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2622019 |
|---|
| End bp | 2623368 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641547468 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001668580 |
|---|
| Protein GI | 167033349 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00893] d-galactonate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTG AACAGAACGC CAGCCTCGGG GTGTTCGACA CCCCTGCGCG CGTCCAGCAA
CGCACCCGCA CCCGTTTCAT GATCCTGGCG CTGATTTCCG GCGGTACCAT GATCAACTAC
CTCGATCGCA GCGTGATGGG TATTGCCGCG CCCAGTATCA GTGCTGACTT GGGCCTGAAC
GCAGCGATGA TGGGGGGGAT CTTTTCCGCC TTTTCCTGGA CCTACGCCGC TGCGCAGATT
CCGGGCGGCA TCCTCATCGA CCGGCTGGGC ACCAAGCTCA CTTACTGGCT GGCACTGACC
TTGTGGTCGC TGTTCACCGG GCTGCAAGGG CTGGCGCAGG GCTTCCTGTC GTTGCTGGGC
ATGCGCTTTC TGGTGGGGAT GACTGAAGCA CCATGCTTTC CCACCAACAG CCGGGTGGTG
GCCACCTGGT TCCCGCAGAG CGAGCGGGCC AGGGCGACCG GTATCTACAC CTTTGCCGAA
TACACCGGGC TGGCGTTTCT GACCCCGCTG CTGTTCTGGG TGCTACACGC TTACGGCTGG
CGTTTCCTGC TGCTGGCGGT CGGCCTGATG GGCATCCTCT ATGGCCTGGT GTGGTGGCGC
AAATACCACG AGCCACACCA GTCGACCACG GCCAACCAGG CCGAGCTGGA CTACATCGCC
GCTGGCGGTG GGGTGATAGA TGGTGGGCAG AAAGCCACGT CGTTCCGCTG GTCGCAGATT
CCGGCGTTGC TCAAGCACCG CAACATGCTG GGCATCTGCC TGGGCCAGTT CGCCTGCAAT
TCGACCAACG TGTTCTTCCT CACCTGGTTC CCCACCTACC TGGTGACCGA GCGGCACATG
CCCTGGCTCA AGGTCGGCTG GGTAGCGGTG CTGCCATTCA TTGCCGCCTC GCTGGGCACG
CTGGTCGGCG GTTGGCTGTC TGACGCGTTG CTGCGCCACG GCTACTCGCT GAACGTGGCG
CGCAAGCTGC CGGTAATCGC CGGGTTGCTT ACCGCGTCGG TGATCGTGCT GGCCAACTAC
GTCGAGTCCG ACGCGCTGGT GATTGCCATC CTGTGCATCG CCTACTTTGC CCAGGGCATG
TCGGCGCTGG CCTGGATGAT CGTGTCCGAT ATCGCCCCCA AAGGCCTGCT GGGCCTCAGC
GGCGGCTTGT TCAACCTGTT CGCCAACGCA GCAGGCATCG TCACGCCGTT GACCATCGGC
ATCATCGTCT CGCTGACAGG CTCGTTCGTC TGGGCCTTGG CATTCGTGTC GTCGATCACC
GTACTCGGTG CGCTGTGCTA CCTGTTCATG GTCAGCGACC TGCGTCGCTT GCCGGAGATT
CCTTCAGTCG AAAATGGAGC AAAACAATGA
|
|---|
| Protein sequence | MTTEQNASLG VFDTPARVQQ RTRTRFMILA LISGGTMINY LDRSVMGIAA PSISADLGLN
AAMMGGIFSA FSWTYAAAQI PGGILIDRLG TKLTYWLALT LWSLFTGLQG LAQGFLSLLG
MRFLVGMTEA PCFPTNSRVV ATWFPQSERA RATGIYTFAE YTGLAFLTPL LFWVLHAYGW
RFLLLAVGLM GILYGLVWWR KYHEPHQSTT ANQAELDYIA AGGGVIDGGQ KATSFRWSQI
PALLKHRNML GICLGQFACN STNVFFLTWF PTYLVTERHM PWLKVGWVAV LPFIAASLGT
LVGGWLSDAL LRHGYSLNVA RKLPVIAGLL TASVIVLANY VESDALVIAI LCIAYFAQGM
SALAWMIVSD IAPKGLLGLS GGLFNLFANA AGIVTPLTIG IIVSLTGSFV WALAFVSSIT
VLGALCYLFM VSDLRRLPEI PSVENGAKQ
|
|---|
| |