| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2329 |
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| Symbol | |
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| ID | 5870118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2596020 |
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| End bp | 2597330 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641547454 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001668566 |
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| Protein GI | 167033335 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.4455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCGT CCAATTCCCG TTCCCCTCGT CGCTGGCTCG TCGGCCTGCT GATCCTGCTG
CTGGTGGCTG CACTGGCCTG GTGGCTTTGG CCTGCAGCAA CGCCCGCGCA CAAAGAAGCC
AGCGGCGGCG GGCGCGGCGG CAAGGGCATG GGCATGATGG GGGGGCGGCC AGGCTTCGGC
GGCTCCAGCG ACCCGGTGCC GGTGCGCGTC GAACCGGTAC GGGTGGGTGA TTTTCCGCTG
TACTACAAGG CCCTGGGCAC CGTCACTGCG ACCAACACAG TGAACGTCCG CAGCCGGGTG
GCAGGCGAAC TGGTGAAAAT CCACTTCAAG GAAGGCCAGC AGGTCAAGGC CGGCGACCTG
CTCGCCGAAA TCGACCCGCG CTCGTACCGC ATCGCCCTGC AGCAGGCCGA AGGCACCCTG
GCGCAGAACC AGGCACAGTT GAAGAACGCC CAGGTCGACC TGGCCCGCTA TAAAGGCCTG
TACGCCGAAG ACAGTATCGC CAAGCAAACC CTCGACACCG CCGAAGCACA AGTGGCGCAG
TTTCAGGGGC TGGTCAAGAC CAATCAGGCA CAGGTCAACG ATGCTCGCCT GAACCTCGAC
TTCACTCAAA TTCGTTCGCC AATCAACGGC CGTGTAGGCC TGCGCCAACT CGACCTGGGC
AACCTGGTGG CGGCCAACGA CGCCACCGCA CTGGTGGTGA TCACCCAGAC CGAGCCGATC
AGCGTCGCCT TCACCCTGCC GGAAACCGAG CTGAGCACCG TGCTGGAGCG CTACCGCAGT
GGCGCGAGCC TGCCGGTCGA GGCCTGGGAC CGCAGTGACA GCAAGCTGCA GTCCACTGGT
GTGCTGGGCA GCATCGACAA CCAGATCGAC ACCACCACCG GCACCCTGAA GTTCAAGGGC
CGCTTCGAGA ACAAGGACCT GGCCCTGTTC CCCAACCAGT TCGTCAACGT GCGCCTGCTG
GCCGACACAC TCAAGCAGGT GGTCATGGCC CCGGCTGCGG CCATCCAGTT TGGCAACGAC
GGCACCTTTG CCTATGTGGT CAACGCCGAA AGCACCGTGA ACGTGCGCAA GCTCAAGGTT
GGCGCCAGCG ACGGCGAGAA CAGCGTCATT CTCGAAGGCC TCAAGGCGGG CGACCGCCTG
GTGCTTGAAG GCACTGACCG CCTGCGCGAA GGCACCAAGG TGGAAGTGGT AGAAGACAGC
TCGCAAGTGC CGACCACGCC CGGCCAGCAC CTGCAAGGCC AGGAAGCCAA GGGCTCGGCG
CACACAGGTG AAGCACAGCC CGGTAACGCA GCAGGCAAGG CGGGCGCATG A
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| Protein sequence | MQASNSRSPR RWLVGLLILL LVAALAWWLW PAATPAHKEA SGGGRGGKGM GMMGGRPGFG
GSSDPVPVRV EPVRVGDFPL YYKALGTVTA TNTVNVRSRV AGELVKIHFK EGQQVKAGDL
LAEIDPRSYR IALQQAEGTL AQNQAQLKNA QVDLARYKGL YAEDSIAKQT LDTAEAQVAQ
FQGLVKTNQA QVNDARLNLD FTQIRSPING RVGLRQLDLG NLVAANDATA LVVITQTEPI
SVAFTLPETE LSTVLERYRS GASLPVEAWD RSDSKLQSTG VLGSIDNQID TTTGTLKFKG
RFENKDLALF PNQFVNVRLL ADTLKQVVMA PAAAIQFGND GTFAYVVNAE STVNVRKLKV
GASDGENSVI LEGLKAGDRL VLEGTDRLRE GTKVEVVEDS SQVPTTPGQH LQGQEAKGSA
HTGEAQPGNA AGKAGA
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