| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2324 |
|---|
| Symbol | |
|---|
| ID | 5870113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2590191 |
|---|
| End bp | 2591063 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547449 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001668561 |
|---|
| Protein GI | 167033330 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAC CGATCAAGCA ACGCCTGGAA AACAGCCTCG AAGGGGCCGC TGCCTCGGGT
CGCAAGATCG CCACCTACAT GCTCGCCAAC CTGCACGAAC TGCCGTTCCA GACTTCAGCC
AGCATTGCCG CCAAGCTGGG CGTCAGCGAA TCGAGCGTCG GGCGGTTCTG CCGCTCATTG
GGTTATGCCC ACCTCAAGGC GCTTAAGCAA GACCTGCAGA ACGATCTTGG CGATGGCCCA
TGGCTGGTGG GTGATCGCCT GCAAGATTAC CGCCAGAACC AGGACGCCAG CGACAACGCC
GGCAGCCTGG AGCTGGAAAT CGCCGCCTTG GTGCGCGTGC ACGAATACCG CCAGAGCACG
GCCTGGCACA CCGTGGCGCA ACGCCTGGCG AGCAAGCCCA GGGTGTTCAT CGCCGGTTTC
CAGACCGAGC GTGGCATCGC CATGTGCATG AGCCACTTGC TGCAATACCT GCGCGATGGT
GTGCAGCTGG TCGACATCAG CGCTGGGCAC TTCGGCGAAG TGCTGCTGGG CCGCGCCGAA
GACAGCGCCC TGGTGGTGTT CGAGGCGCGC CGCTATTCCC GCCACGCCCT GATGCTGTGC
CAGAAGGCAC GCGAGGCTGG CATTGCGGTC ACCCTGGTGA CCGACACCTT CTGTGACTGG
GCCGATGCCA ATGCCGACGA GGTGTTCCGC ATCCCCACCG AGTTCAATCT GTTCTGGGAA
TCCACCTCGA CGATGCTGTC GTGGGTGCAC CTGATGGTCA ACGAGGTCTG CAAGAAGCTC
GGGCCGGATG TTGAAAAACG CTTGGAAGCG ACTGCCGCTC TACATAACGA ATTCGTCGGC
TACACCTCGT GGTCGACGGG CAAACAACAA TAG
|
|---|
| Protein sequence | MSQPIKQRLE NSLEGAAASG RKIATYMLAN LHELPFQTSA SIAAKLGVSE SSVGRFCRSL
GYAHLKALKQ DLQNDLGDGP WLVGDRLQDY RQNQDASDNA GSLELEIAAL VRVHEYRQST
AWHTVAQRLA SKPRVFIAGF QTERGIAMCM SHLLQYLRDG VQLVDISAGH FGEVLLGRAE
DSALVVFEAR RYSRHALMLC QKAREAGIAV TLVTDTFCDW ADANADEVFR IPTEFNLFWE
STSTMLSWVH LMVNEVCKKL GPDVEKRLEA TAALHNEFVG YTSWSTGKQQ
|
|---|
| |