Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2276 |
Symbol | |
ID | 5870065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2539106 |
End bp | 2540311 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547401 |
Product | ABC transporter, periplasmic binding protein |
Protein accession | YP_001668513 |
Protein GI | 167033282 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.278656 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.376143 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCATGG ATGACTGCTG TTCCACTTCT TCGCGTCGTG ATTTTCTCAA ACTCGGAGCC ATGCTTACCG CCGCCGGTGC GCTGCCGTTG CTGTCGAGCT TGCAGGCCCG CGCCGCCGCC GAGCCGGACG CACCGGTGCG CATCGGCTAT CTGCCGATCA CCGACGCCAC GCCACTGCTG GTGGCGCATA ACAACGGGCT GTTCGAGGCC GAAGGCATCA AGGCCGAGCG CCCGGTGCTG CTGCGCAGTT GGGCGCAGGT GATCGAGGCG TTCATCTCGG GTCAGGTCAA CGTCATCCAC CTGTTGTCGC CGATGACCGT ATGGGCGCGC TATGGCAGCA AAGTGCCGGC CAAAGTGGTG GCCTGGAACC ATGTGGGCGG TTCGGGGCTG ACCGTGGCGC CCGATATCAC CGACATGAAA CAGCTCGGTG GCAAGACCGT GGCGATTCCG TTCTGGTATT CGATCCACAA CGTGGTACTG CAGCAGATGC TCAACGACAA TGGTCTGTCG CCGGTGTCGA AGCCGGCCAA TGCGCAGCTA GCTGCCAACG AAGTCAACCT GCTGGTGCTG CCGCCGTCCG ACATGCCACC GGCGCTGGCC AGCAAGCGCA TCGCCGGCTA CATCGTTGCC GAGCCGTTCA ATGCCCTGGC CGAAAACCTC AAGGTTGGCC GCGTGCAGCG CTTTACCGGC GATGTGTGGC GCAATCACGC CTGCTGCGTG GTGTTCATGC ACGAACATGA CCTGAACAAC CGTCCAGAGT GGTCGCAGAA GGTGGTCAAC GCCATCGTCA AGGCCCAGCA CTGGACCCGC GACCACCGCG CCGAGGCCGC GGCCTTGCTG TCCAAGGCCG GCCCCAACAA GTACACCCCG CACGAGCCTG CGGTGTTGGC CAAGGTTCTG GCGCCTGCCG CCGAGGACCG TGCAGGCTAT ATTGCCAGTG GCGCCATTCG CCATCAGCAG TGGGACGAAA AACGCATCGA CTTCCAGCCA TACCCGTTCC CGAGCTACAC CGAAGAGCTG GTCAAGCGCC TGAAAACCAC CCTGATCGAA GGCGACAACG GCTTTCTGGC CGGGCTGGAC CCGGCGCAGA CCGCCCGCGA CCTGGTCGAC GATCGCTTCG TGCGCAATGC CATCGCTGCA GTCGGCGGCC CGTCGGTGTT CGGCATTGCC GACAACTTCG AGCGTAGCGA GGAGTTCGCG GTCTGA
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Protein sequence | MCMDDCCSTS SRRDFLKLGA MLTAAGALPL LSSLQARAAA EPDAPVRIGY LPITDATPLL VAHNNGLFEA EGIKAERPVL LRSWAQVIEA FISGQVNVIH LLSPMTVWAR YGSKVPAKVV AWNHVGGSGL TVAPDITDMK QLGGKTVAIP FWYSIHNVVL QQMLNDNGLS PVSKPANAQL AANEVNLLVL PPSDMPPALA SKRIAGYIVA EPFNALAENL KVGRVQRFTG DVWRNHACCV VFMHEHDLNN RPEWSQKVVN AIVKAQHWTR DHRAEAAALL SKAGPNKYTP HEPAVLAKVL APAAEDRAGY IASGAIRHQQ WDEKRIDFQP YPFPSYTEEL VKRLKTTLIE GDNGFLAGLD PAQTARDLVD DRFVRNAIAA VGGPSVFGIA DNFERSEEFA V
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