Gene PputGB1_2227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2227 
Symbol 
ID5870016 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2482894 
End bp2484990 
Gene Length2097 bp 
Protein Length698 aa 
Translation table11 
GC content63% 
IMG OID641547352 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001668464 
Protein GI167033233 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.330245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.58075 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTAG CTGCAAACCC CGACATCATG TACCGGCTGT TGATCCAGAG CGTGGTGGAT 
TACGCCATCT ACCTGCTCAC CCCCGAGGGT ATCGTCGCCA ACTGGAACCC CGGTGCCCAG
CGCGCCAAGG GCTACCATGC CGATGAAATC GTCGGCCAGC ATTACTCGCT GTTCTACACC
GATGCCGAGC GCGCAGCCGG GTTGCCAGCG CTTAACCTGG AGCAGGCGCG CAGCACGGGG
CGTTTTGAAG AAATGGGTTC GCGCCTGCGT AAAGATGGCT CGGCCTTTCT TGCCCATGTG
GTGATTGAAG CGGTGTACGA CGATGCCGGG CAACTGGTGG GTTTCGCCAA GGTCACCCGC
GATGTTTCCG AGCGTCATCG CCAGGAACAG GAGTTGTTGC AGGCCAAGGA GCTGGCCGAG
CAATACAGCC AGGAAATGGC CAAGCTCTCG CAGTTTCTTG ATTCGGTGAT CGCCAACATC
CCCGCCAGCG TCATTGTCCA GGACCTGGAA AGCCAGCGCA TCCTGCTGGC CAACCAGCAG
GCCGAGCGCC TGTTTGGCGG GCCAGGGCGC AGCATGATTG GCCAGTTGCC CGGCGAATGC
TTGGCACCGG CCGCTGCCGA TTATCTGGAA CAGCAGCTGG CGCGCGGTGC CCGCAGCCCC
AAGGGGCATG CCGCTGAAAC GCGTGTCGAT ACCGCCCGTG GCCCACGCAC CTTGCGCAGC
CGCACCTTGC TCAGTCAGAA CCGCGAGGGC CAGGCCGACT ACGTGTTGTT CGTAGCCGAA
GATGCCACCG AAGAGCTGGC CGCCCATGCG CAGATCCACC ACATGGCGCA CCACGACGCG
CTCACCGGGT TACCCAATCG CACGCTGTTC AATGAGCGCC TTCGCCAGGC GCTGGTGCGT
GGTAGCGAAA ACGCCAAGCT GACCGCCGCA CTGTGCCTGG ACTTGGACAA CTTCAAGAAC
ATCAACGACT CCCTCGGCCA TGCCTTTGGC GACAAACTGC TGCGCGAGTT GGGCAAGCGC
CTGCGCCGCG AGTTGCGTGA ACACGACACC TTGGCCCGCT TGGGCGGTGA CGAGTTTGCC
GTGGTGCTGA CGGGCCTGGA GGGGCGGGAT GCCGCGTGCA ACACCGCGCA TCGCCTGATC
AACGCCATCA GCCCGCCGTT CCAGATCGAA GGCCACCAGT TCAGCGTGGG GGTGAGCATC
GGCATTGCCA TCGCCCCGGA TGACAACGAC CAGGCCGAGC AGTTGCTGGG CTACGCCGAC
ATGGCGTTGT ACGAAGCCAA GCGCAATGGG CGAAACCGCT ACGAGTGCTT CGACGTCGAA
TTGGACGTTG CCGCCCGCCA GCGCCGCCTG GTGGAAACCG ACTTGCGCAC CGCGTTGCAC
CTGGGCCAGT TGCAGTTGCA TTACCAGCCG GTGGTCGACC AGCAGACCAG CAGCGTTACC
GGTTATGAGG CGCTGCTGCG TTGGGAGCAC CCGACTCGCG GCATGGTCAT GCCCATGGAC
TTCATCCCCA TTGCCGAAGA AACCGGACTG ATCCATGAAC TGGGCAACCG CGCACTCAAC
CTGGCCTGCC AGGAGGCTGC CAGTTGGGAC AGTGAGCAGA CGGTGTCGGT CAACCTGTCG
GCGGTGCAGT TCAAGAACGC CAACCTGGTG CACACCGTGG CCTTGGCGCT GGCCGACTCG
GGCCTGCCGG CGCAGCGACT GGAGCTGGAA ATTACCGAGT CGGTATTGCT GGGCAACAGC
GAGGAAAACG TGCGTACCCT GCGTGCGTTG AAAGACCTGG GTGTGTCCAT TTCTCTGGAC
GACTTTGGCA CCGGTTACTC ATCGTTGGGT TACCTGCGTT CGTTCCCGTT CGACCGGATC
AAGATCGACA AGTCGTTCGT GCATGACATG TGCGACAGCC GCGAAGCGAT GTCGATCATC
CGCGCCATTA CCGACCTGTC CAACAGTTTG ATGATCAAGA CCACGGCCGA AGGTGTGGAG
TCAGAGGAAC AGATGCGCCG GCTGGCGGCG GAGGGCTGCT CGCACTTTCA GGGCTACCTG
TACGGGCGGC CAGCGCCGGC GAGCGAGCGG TTGAAGCAGG TGGTAACCCT GAGCTAA
 
Protein sequence
MSLAANPDIM YRLLIQSVVD YAIYLLTPEG IVANWNPGAQ RAKGYHADEI VGQHYSLFYT 
DAERAAGLPA LNLEQARSTG RFEEMGSRLR KDGSAFLAHV VIEAVYDDAG QLVGFAKVTR
DVSERHRQEQ ELLQAKELAE QYSQEMAKLS QFLDSVIANI PASVIVQDLE SQRILLANQQ
AERLFGGPGR SMIGQLPGEC LAPAAADYLE QQLARGARSP KGHAAETRVD TARGPRTLRS
RTLLSQNREG QADYVLFVAE DATEELAAHA QIHHMAHHDA LTGLPNRTLF NERLRQALVR
GSENAKLTAA LCLDLDNFKN INDSLGHAFG DKLLRELGKR LRRELREHDT LARLGGDEFA
VVLTGLEGRD AACNTAHRLI NAISPPFQIE GHQFSVGVSI GIAIAPDDND QAEQLLGYAD
MALYEAKRNG RNRYECFDVE LDVAARQRRL VETDLRTALH LGQLQLHYQP VVDQQTSSVT
GYEALLRWEH PTRGMVMPMD FIPIAEETGL IHELGNRALN LACQEAASWD SEQTVSVNLS
AVQFKNANLV HTVALALADS GLPAQRLELE ITESVLLGNS EENVRTLRAL KDLGVSISLD
DFGTGYSSLG YLRSFPFDRI KIDKSFVHDM CDSREAMSII RAITDLSNSL MIKTTAEGVE
SEEQMRRLAA EGCSHFQGYL YGRPAPASER LKQVVTLS