| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2227 |
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| Symbol | |
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| ID | 5870016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2482894 |
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| End bp | 2484990 |
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| Gene Length | 2097 bp |
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| Protein Length | 698 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547352 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001668464 |
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| Protein GI | 167033233 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.330245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.58075 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTAG CTGCAAACCC CGACATCATG TACCGGCTGT TGATCCAGAG CGTGGTGGAT
TACGCCATCT ACCTGCTCAC CCCCGAGGGT ATCGTCGCCA ACTGGAACCC CGGTGCCCAG
CGCGCCAAGG GCTACCATGC CGATGAAATC GTCGGCCAGC ATTACTCGCT GTTCTACACC
GATGCCGAGC GCGCAGCCGG GTTGCCAGCG CTTAACCTGG AGCAGGCGCG CAGCACGGGG
CGTTTTGAAG AAATGGGTTC GCGCCTGCGT AAAGATGGCT CGGCCTTTCT TGCCCATGTG
GTGATTGAAG CGGTGTACGA CGATGCCGGG CAACTGGTGG GTTTCGCCAA GGTCACCCGC
GATGTTTCCG AGCGTCATCG CCAGGAACAG GAGTTGTTGC AGGCCAAGGA GCTGGCCGAG
CAATACAGCC AGGAAATGGC CAAGCTCTCG CAGTTTCTTG ATTCGGTGAT CGCCAACATC
CCCGCCAGCG TCATTGTCCA GGACCTGGAA AGCCAGCGCA TCCTGCTGGC CAACCAGCAG
GCCGAGCGCC TGTTTGGCGG GCCAGGGCGC AGCATGATTG GCCAGTTGCC CGGCGAATGC
TTGGCACCGG CCGCTGCCGA TTATCTGGAA CAGCAGCTGG CGCGCGGTGC CCGCAGCCCC
AAGGGGCATG CCGCTGAAAC GCGTGTCGAT ACCGCCCGTG GCCCACGCAC CTTGCGCAGC
CGCACCTTGC TCAGTCAGAA CCGCGAGGGC CAGGCCGACT ACGTGTTGTT CGTAGCCGAA
GATGCCACCG AAGAGCTGGC CGCCCATGCG CAGATCCACC ACATGGCGCA CCACGACGCG
CTCACCGGGT TACCCAATCG CACGCTGTTC AATGAGCGCC TTCGCCAGGC GCTGGTGCGT
GGTAGCGAAA ACGCCAAGCT GACCGCCGCA CTGTGCCTGG ACTTGGACAA CTTCAAGAAC
ATCAACGACT CCCTCGGCCA TGCCTTTGGC GACAAACTGC TGCGCGAGTT GGGCAAGCGC
CTGCGCCGCG AGTTGCGTGA ACACGACACC TTGGCCCGCT TGGGCGGTGA CGAGTTTGCC
GTGGTGCTGA CGGGCCTGGA GGGGCGGGAT GCCGCGTGCA ACACCGCGCA TCGCCTGATC
AACGCCATCA GCCCGCCGTT CCAGATCGAA GGCCACCAGT TCAGCGTGGG GGTGAGCATC
GGCATTGCCA TCGCCCCGGA TGACAACGAC CAGGCCGAGC AGTTGCTGGG CTACGCCGAC
ATGGCGTTGT ACGAAGCCAA GCGCAATGGG CGAAACCGCT ACGAGTGCTT CGACGTCGAA
TTGGACGTTG CCGCCCGCCA GCGCCGCCTG GTGGAAACCG ACTTGCGCAC CGCGTTGCAC
CTGGGCCAGT TGCAGTTGCA TTACCAGCCG GTGGTCGACC AGCAGACCAG CAGCGTTACC
GGTTATGAGG CGCTGCTGCG TTGGGAGCAC CCGACTCGCG GCATGGTCAT GCCCATGGAC
TTCATCCCCA TTGCCGAAGA AACCGGACTG ATCCATGAAC TGGGCAACCG CGCACTCAAC
CTGGCCTGCC AGGAGGCTGC CAGTTGGGAC AGTGAGCAGA CGGTGTCGGT CAACCTGTCG
GCGGTGCAGT TCAAGAACGC CAACCTGGTG CACACCGTGG CCTTGGCGCT GGCCGACTCG
GGCCTGCCGG CGCAGCGACT GGAGCTGGAA ATTACCGAGT CGGTATTGCT GGGCAACAGC
GAGGAAAACG TGCGTACCCT GCGTGCGTTG AAAGACCTGG GTGTGTCCAT TTCTCTGGAC
GACTTTGGCA CCGGTTACTC ATCGTTGGGT TACCTGCGTT CGTTCCCGTT CGACCGGATC
AAGATCGACA AGTCGTTCGT GCATGACATG TGCGACAGCC GCGAAGCGAT GTCGATCATC
CGCGCCATTA CCGACCTGTC CAACAGTTTG ATGATCAAGA CCACGGCCGA AGGTGTGGAG
TCAGAGGAAC AGATGCGCCG GCTGGCGGCG GAGGGCTGCT CGCACTTTCA GGGCTACCTG
TACGGGCGGC CAGCGCCGGC GAGCGAGCGG TTGAAGCAGG TGGTAACCCT GAGCTAA
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| Protein sequence | MSLAANPDIM YRLLIQSVVD YAIYLLTPEG IVANWNPGAQ RAKGYHADEI VGQHYSLFYT
DAERAAGLPA LNLEQARSTG RFEEMGSRLR KDGSAFLAHV VIEAVYDDAG QLVGFAKVTR
DVSERHRQEQ ELLQAKELAE QYSQEMAKLS QFLDSVIANI PASVIVQDLE SQRILLANQQ
AERLFGGPGR SMIGQLPGEC LAPAAADYLE QQLARGARSP KGHAAETRVD TARGPRTLRS
RTLLSQNREG QADYVLFVAE DATEELAAHA QIHHMAHHDA LTGLPNRTLF NERLRQALVR
GSENAKLTAA LCLDLDNFKN INDSLGHAFG DKLLRELGKR LRRELREHDT LARLGGDEFA
VVLTGLEGRD AACNTAHRLI NAISPPFQIE GHQFSVGVSI GIAIAPDDND QAEQLLGYAD
MALYEAKRNG RNRYECFDVE LDVAARQRRL VETDLRTALH LGQLQLHYQP VVDQQTSSVT
GYEALLRWEH PTRGMVMPMD FIPIAEETGL IHELGNRALN LACQEAASWD SEQTVSVNLS
AVQFKNANLV HTVALALADS GLPAQRLELE ITESVLLGNS EENVRTLRAL KDLGVSISLD
DFGTGYSSLG YLRSFPFDRI KIDKSFVHDM CDSREAMSII RAITDLSNSL MIKTTAEGVE
SEEQMRRLAA EGCSHFQGYL YGRPAPASER LKQVVTLS
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