Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2199 |
Symbol | |
ID | 5869988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2455095 |
End bp | 2456126 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547324 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001668436 |
Protein GI | 167033205 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGACAG TCTTTAGTAA CAACCACCGC TTGCACCATG GCTCGGAACT CAAGGACGGC GCGATAACGC CATCGTTTGA AAACCCCCAG CGTGCCGACA CCGTGCTGGC CCGGGTGCTC GGCACCGGCC TGGGCGATGT CATCGCCGAG CAGGCGTTCG ACCGTGCCTG CTACGTGGCG GCGCACAGCG AACGCTATGT GAGCTTCCTG GAAAACGCCT GGCAGGAATG GGCCGCCACC GGCAAGACCC ACGACGCGCT GCCGCTGGTG TGGCCGGTGC GTGACCTGGC CATCGACCGT GAGCCCGGCT TCATCGACGG CAAGCTTGGT TTCTACGCCA TGGACGCCGG TGCGCCGATC ACCGCTGGCA CCTGGGAGGC GGTACGCAGC AGCGCCAACG TTGCCCTGAC CGGCATGCAG CGCATCATCG ACGGTGCCGA CAGTGCCTTC GCCCTGTGCC GCCCGCCTGG GCACCATGCG GCGCGTGAAT ACATGGGCGG CTATTGCTAC CTGAACAACG CTGCCATCGC CGCCGAGCGC TGCCTGAGCC AGGGCGCCAA GCGTGTGGCC GTGCTGGACG TGGACTTCCA CCACGGCAAC GGCACGCAGA ACATCTTCTA CGATCGCCCC GATGTGCTGT TCGCCTCCCT GCATGGTGAC CCTCACGTGT CCTACCCGTA CTTTTCCGGC TACGCCCATG AGCAGGGTGT GGGCGCAGGC GAAGGCTTCA ACGTCAACTA CCCGCTGGGC AAAGGCACGC GCTGGGCGCA GTACCAGCTG GCCCTGCAGG ACGCGCTCAA GCGCATCGTT GCGCATCGGC CCGAATACCT GGTGGTGTCG CTTGGCGTCG ACACCTTCGA GGACGACCCG ATCAGCCATT TCAAACTCAC CAGTGAAGAC TTCCTGCGCA TGGGCGCCGA GATCGCCAGT GCTGGCATCC CGACCCTGTT CGTGATGGAA GGCGGCTACA TGGTCGATGA GATCGGCATC AACGCGGTGA ACACCCTGCA AGGCTTCGAA AGCGCGCGTT AA
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Protein sequence | MLTVFSNNHR LHHGSELKDG AITPSFENPQ RADTVLARVL GTGLGDVIAE QAFDRACYVA AHSERYVSFL ENAWQEWAAT GKTHDALPLV WPVRDLAIDR EPGFIDGKLG FYAMDAGAPI TAGTWEAVRS SANVALTGMQ RIIDGADSAF ALCRPPGHHA AREYMGGYCY LNNAAIAAER CLSQGAKRVA VLDVDFHHGN GTQNIFYDRP DVLFASLHGD PHVSYPYFSG YAHEQGVGAG EGFNVNYPLG KGTRWAQYQL ALQDALKRIV AHRPEYLVVS LGVDTFEDDP ISHFKLTSED FLRMGAEIAS AGIPTLFVME GGYMVDEIGI NAVNTLQGFE SAR
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