| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2195 |
|---|
| Symbol | |
|---|
| ID | 5869984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2450556 |
|---|
| End bp | 2452154 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547320 |
|---|
| Product | putative transporter |
|---|
| Protein accession | YP_001668432 |
|---|
| Protein GI | 167033201 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.528619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCACA AGAATAAAAA GATTGATGTG TTCCTGATTA CCGTGAGCCT GATTGCCGTG
CTGCTCACCG TGATCGGCCT TGCAGCCTTC CCCGCCCAGG CTGAAAGCGC CGCCAACCAG
TTGTTCGAGC TGTCCACCCG CACCTTCGGT ACCAGCGTGC AGGTGCTGGT GTTCGCCAGT
ACCCTGGCGG TGCTGTACCT GGCTTTCAGC AAATACGGCA ACATCCGCCT GGGCAGTGGC
AAGCCTGAAT ACGCCACCGC CACCTGGGTG TTCATGTTCA TCTGTGCCGG CATGGGGTCC
TCGACCCTGT ACTGGGGCGT GATGGAATGG GCCTACTACT ATCAGACCCC AGGCCTGAAC
ATCGCCGCCG CCACCCCCAA GGCGCTGGAG TACAGCGTGG GCTACTCGTT CTTCCACTGG
GGCATCAGCG CCTGGTCGAT CTACGCCTTG GCTTCGCTGG CCATGGCCTA CCACTTCCAT
GTCCGCAAGA AGAGCGGCCT GAACCTGGCG TCGATTATCG AAGCGGTGAC GGGTTTCAAG
GCCACCGGGC CAGTAGGCCG TACTGTCGAC CTGATCTTCC TGTTGACCAT GATGGGCGCC
CTGACCGTGT CGCTGGCCCT CACTGCCTCT ACCCTGACGC GCGGCCTGCA TGACCTGACC
GGCACCCCGG ATACCTTCAC CGTGCAATTG ATGGTGATCG GCGGCGTGGC GGTGATGTTC
TCGCTCAGCT CCTACATCGG CATCGATGGC GGCCTGCAGC GCCTGAGCAA GATGGTGTGC
ATCGGCGCGC TGGTGTTTGC CGCTGTCGTC CTGCTGGTCG GCCCAACTCA GTTCACCCTC
AACAACACCG CCAACTCGAT TGGCCTGATG ATCCAGAACT ACGTGCACAT GAGCCTGTTC
ACCGACCCGG CCGGCGACGG TGCCTTCACC CGCAACTGGA CGGTGTTCTA CTGGCTGTGG
TGGGTGTCGT ACGCCCCGGG CGTAGCAATG TTCGTCACCC GCGTTTCGCG CGGCCGGCAG
ATCAAGGAAG TGGTCCTGGC CCTGCTGCTA GGCGGCAGCT TCGGTTGCTG GTTCTTCTTC
GGCGCACTGG AAAGCTACAG CATGCACCAG TTCATCACCG GCGCGGTGGA CGTACCGAAG
ATGCTGGCCG AGCAAGGCGG TGAGTCGGCT GTAACCCACC TGCTGCTGGC GTTGCCGTGG
GGCCAAGTGT TCCTTGGCGT GTACCTGTTC ATCATGGCCA TCTTCTGCGC TTCGCACATG
GATGCCGCAG CCTACGCGGT GGCAGCCACC AGCACTCGCA ACCTGCGTGA AGGTGACGAC
CCGACACCGA CCCACCGCCT GTTCTGGTGT GTGGTATTGA CCCTGGTGCC GTTGGCCATG
CTGTTCGCCA AGGCTTCGCT GTCGACCATG AAGACTGCCG TGGTGCTGAC CGCAATCCCG
TTCATGGTGA TTCTGCTGGT GAAGATCTAC GGCTTCCTCA AGTGGATGGT CGCTGACTAC
GGCCAGGTAC CGGCCCACAT CATCGAAGAA GAGGCTGCAC GGATGGCCGG TGAACAACCT
GCCGAGCATG CACCGCGCAG CGCTGCTGCC GTGCATTGA
|
|---|
| Protein sequence | MSHKNKKIDV FLITVSLIAV LLTVIGLAAF PAQAESAANQ LFELSTRTFG TSVQVLVFAS
TLAVLYLAFS KYGNIRLGSG KPEYATATWV FMFICAGMGS STLYWGVMEW AYYYQTPGLN
IAAATPKALE YSVGYSFFHW GISAWSIYAL ASLAMAYHFH VRKKSGLNLA SIIEAVTGFK
ATGPVGRTVD LIFLLTMMGA LTVSLALTAS TLTRGLHDLT GTPDTFTVQL MVIGGVAVMF
SLSSYIGIDG GLQRLSKMVC IGALVFAAVV LLVGPTQFTL NNTANSIGLM IQNYVHMSLF
TDPAGDGAFT RNWTVFYWLW WVSYAPGVAM FVTRVSRGRQ IKEVVLALLL GGSFGCWFFF
GALESYSMHQ FITGAVDVPK MLAEQGGESA VTHLLLALPW GQVFLGVYLF IMAIFCASHM
DAAAYAVAAT STRNLREGDD PTPTHRLFWC VVLTLVPLAM LFAKASLSTM KTAVVLTAIP
FMVILLVKIY GFLKWMVADY GQVPAHIIEE EAARMAGEQP AEHAPRSAAA VH
|
|---|
| |