Gene PputGB1_2178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2178 
Symbol 
ID5869967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2427029 
End bp2429281 
Gene Length2253 bp 
Protein Length750 aa 
Translation table11 
GC content66% 
IMG OID641547303 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001668415 
Protein GI167033184 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00477296 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACGCC TGCGCACCGA CGGCCTGCTG CGTCGCCTGC TGCTGTTCAT CCTGCTGTTC 
AGCCTGTGCT TCACCGTGCT GGCCAGTGGC GTGCAGCTGT ACATCGAGTA CCGCCGCGAA
ATGCGTGACA TAGACGCACG CATGGCGTTG ATCCGCGCCG GCTACCTGGC CAGCCTGGAG
CGTAGCCTGT GGGACCTGGA CGAGGCGCAG CTGGATGTGC AACTGCGCGG CCTGGTGGAC
TTTTCCGATG TGGCGCGGGT GCGCCTGGTC AGTGATGATT TCCAGTTGTT GCGCGGTGAG
GCCGAAGCCA CAGGGCCGCT GCGCATCGAG CGCTTCCCCC TTGATTATCA GCCACCCTCG
GGGCCGCCCA GGCACCTGGG CGAGCTGGAA GTCAGCATCG ACCTGGGCGC GGTGCACCGC
CGGTTGTACG CCACAGGCCT TGCCAGCCTG CTGTGGATGG GCGTGTTTCT GTGCGGCCTG
GCAGTGGCAC TGTCGGGGCT GTTCTACCGC CTGGTCACCC GCCACCTGCA AGTGATGGCC
GAATTTGCCC GTCGTATTGG CGCCGGCCAG TGGCAGGAGC CGTTGCGCCT GGGGCGCCGA
CGTTCAGCGC GCCCCGATGA GATCGACACG GTGGCCAATG CCCTGGACGA TATGCGCCGC
GCCATCCTCA GCGATATCGA GCGCCGTGAG CGCGACCGCC TGGAGCTGCA GGGCAAGCGC
GACGAATTGC AGGCCATGGT CGAGCGGCGT ACGGCCAGCC TGGCCCGCGC CAAGGACGAG
GCCGAGGCTG CCAACCTGGC CAAGTCACGC TTCCTGGCGA CCATGAGCCA TGAACTGCGC
ACGCCGCTCA ACGGCATTCT GGGCATGGCC GAACTGCTGC GCGGCGGGCG CCTGGAGGCG
GCCGACCGCC AGCGTGTCGA GGCCTTGTAC AAAGCCGGCG AGGGCCTGCT GGCGATTCTC
AACGAGGTGC TGTATTTCGC CCGGCTCGAA GAAGGCGAAA GCCGCGCCGA GCTGGTAGGT
TTTTCCTTGC GCCAGTTGTG CCAGGAAGTG CTGGCGTTGC TCGAACCCAT GGCCATGGAA
AACGCCGACA CCCTGCAACT GCATGTCGAT GAGCAGTTGG CCGCGCACCA GCACGGCGCC
GAGCAATACC TGCGCCAGGT GCTGAGCAAC CTGCTGGCCA ATGCCATCAA GTTCACCGAG
CACGGCCAGG TACAGCTTAC GGTGCAGGTG CTGGCCAGCA ACGAACGCTC GCAGCGCCTG
CGGTTGTCGG TCAGTGACAA TGGCATCGGC ATCGAGCCCG CCGTACAGGC GAAGATCTTC
GACCGCTTCG TCCAGGCCAG CGAAACAGTG GCGCGTCGCT ATGGCGGCAC TGGCCTGGGC
CTGGCGATCT GCAAGCACCT GGTGGAAAAA CTGGGCGGCA GCATCGGCCT GGACAGTGTG
CAAGGGCAGG GCAGTTGCTT CTGGTTCGAG CTTGACATGG CACGCGGGCA GCCCGTGCCT
GCCGGCTCAC CTGCCCCTTT GTCCTTGCTA AGCCTGGATA TCCTGGTGGT CGAGGACGTT
GCGCTGAACC GCGAGGTGGC GGGTGGCCTG CTGCTGCGCG ATGGCCACCG GGTGAGCTTT
GCCGAAGACG CCGGGCAAGC CCTGCAGGCG TGTGCGCAGC GGCGCTTCGA TCTGGTCTTG
CTTGACGTGC ACTTGCCGGG CATGAGCGGG GTGGAGTTGT GCCGACAGCT GCGTGCCTCG
CCTGGTCCGA ACCGCCACAG TCGGATCCTG GCACTGACGG CTGGCGTGCA GCCGGGGCAG
GTATCGGGCT ACCTGGATGC TGGCATGCAA GGGGTACTGG CCAAGCCCTT GCGGCTGGAC
AACCTGCGCG AGGCGCTGGC CGAAGTAGCC TGCGGCGAAG TGACCAGCGC TGACGCAGAC
ATGGACTGGT CACTGCTGGA CACCCACCGC TCGCTGCTGG GCAAACAGAA GCTGCAAGGC
CTGTTGAAGG TGCTGCGCCA ATCACTGGAG CAGCATGCCA CGGCGCTGGC CGAGGCGCTG
CCGGCCCAGG ACTTCACCGA AGTGCTGCAC CTGGCCCATC GCCTGGCCGG TAGCTGCGAT
TCCTTGGGGT TCGCCGGGCT GGCAGCGCTG TTGCATCGCC TGGAAGAGGC GGCCCGGCAG
CAGGACATCG AGGCGATGCA AACCCTCGAC GGGCCGCTGG CCACCCAGCT AAGTCAGGCC
CGCGCCACGC TGGAACAGCT GATCCAGAGC TGA
 
Protein sequence
MIRLRTDGLL RRLLLFILLF SLCFTVLASG VQLYIEYRRE MRDIDARMAL IRAGYLASLE 
RSLWDLDEAQ LDVQLRGLVD FSDVARVRLV SDDFQLLRGE AEATGPLRIE RFPLDYQPPS
GPPRHLGELE VSIDLGAVHR RLYATGLASL LWMGVFLCGL AVALSGLFYR LVTRHLQVMA
EFARRIGAGQ WQEPLRLGRR RSARPDEIDT VANALDDMRR AILSDIERRE RDRLELQGKR
DELQAMVERR TASLARAKDE AEAANLAKSR FLATMSHELR TPLNGILGMA ELLRGGRLEA
ADRQRVEALY KAGEGLLAIL NEVLYFARLE EGESRAELVG FSLRQLCQEV LALLEPMAME
NADTLQLHVD EQLAAHQHGA EQYLRQVLSN LLANAIKFTE HGQVQLTVQV LASNERSQRL
RLSVSDNGIG IEPAVQAKIF DRFVQASETV ARRYGGTGLG LAICKHLVEK LGGSIGLDSV
QGQGSCFWFE LDMARGQPVP AGSPAPLSLL SLDILVVEDV ALNREVAGGL LLRDGHRVSF
AEDAGQALQA CAQRRFDLVL LDVHLPGMSG VELCRQLRAS PGPNRHSRIL ALTAGVQPGQ
VSGYLDAGMQ GVLAKPLRLD NLREALAEVA CGEVTSADAD MDWSLLDTHR SLLGKQKLQG
LLKVLRQSLE QHATALAEAL PAQDFTEVLH LAHRLAGSCD SLGFAGLAAL LHRLEEAARQ
QDIEAMQTLD GPLATQLSQA RATLEQLIQS