| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2058 |
|---|
| Symbol | |
|---|
| ID | 5869847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2309437 |
|---|
| End bp | 2310447 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641547183 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_001668295 |
|---|
| Protein GI | 167033064 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.158204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCCC GTTTCGCCAC CCTGCTCGCC GGCCTAGGCC TTACCGGCCT GGCCCAGGCC
GCGGCCACCC ACTACCCGCT GACGCTCGAC AACTGCGGCA AGCCGCAGAC GTTCGCCCAG
GCGCCACAGC GCGCCGTCAC CATCGGCCAG GCCGGTACCG AGATGCTCTA TGCACTGGGG
CTGGGCGACA AACTGGCGGG CACCTCGCTG TGGTTCAACA ACGTGCTGCC CGAGTACCAG
GCAGTGAACG CCAAGGTGCC GCGCCTGGCC GACAACGACC CCAGCTTCGA AGCCGTGGTC
GGCAAGCGCC CGCAATTGGT GGCGGTGCAG TTCGAATGGA TGGTCGGTGC CCAGGGCGTG
GTCGGCACCC GCGAACAGTT CGATGAACTG AAGATCCCCA CCTACCTGCT GCCGTCGGAC
TGCGAAGGCA AGGACAACCT GGTCGGCGCC GACGGCACCC GTCTGCAGGC GTTCCAGGTC
AGCAGCATCT ACAAGAGCAT CAGCCAGCTG GCCGAGATCT TCGATGTGCA GGACCGCGGC
AATGCTCTGA ATGCCGAGCT CAAAGGCCGC CTGGACAGTG CCAAGGCGCA ACTGGCCGGC
AAGGACCTGT CGGCCACCTC GGCATTGTTC TGGTTCTCCA GCGCCGACCT CGACATCGAC
CCTTATGTGG CCGGCCGCCA GGGCGTCGCC GACTTCATGC TGCGCACCCT GGGTGTGCGC
AACGTGGTCG AGTCCAGCGA AGAATGGCCG ACCGTAGGCT GGGAAACCCT GGCCAAGGCC
AACCCCACCT GGCTGATCAT CGCCCGCATG GACCGCCGCC GCTTCCCCGC CGACGACTAC
CAGAAAAAGC TCGAATTCCT GCGCAGCGAC CCGGTAACCC GCAACATGGA TGCGGTGAAG
TACGATCGCA TCATCATTCT TGACGCCGAC GCCATGCAAG CCGGCATCCG CCTGTTCCGC
GGCGTGCAGA CGCTAGCCAC AGCCTTCGCC AGCGGTAAAG CAGCCCAGTG A
|
|---|
| Protein sequence | MLPRFATLLA GLGLTGLAQA AATHYPLTLD NCGKPQTFAQ APQRAVTIGQ AGTEMLYALG
LGDKLAGTSL WFNNVLPEYQ AVNAKVPRLA DNDPSFEAVV GKRPQLVAVQ FEWMVGAQGV
VGTREQFDEL KIPTYLLPSD CEGKDNLVGA DGTRLQAFQV SSIYKSISQL AEIFDVQDRG
NALNAELKGR LDSAKAQLAG KDLSATSALF WFSSADLDID PYVAGRQGVA DFMLRTLGVR
NVVESSEEWP TVGWETLAKA NPTWLIIARM DRRRFPADDY QKKLEFLRSD PVTRNMDAVK
YDRIIILDAD AMQAGIRLFR GVQTLATAFA SGKAAQ
|
|---|
| |