Gene PputGB1_2050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2050 
Symbol 
ID5869839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2302619 
End bp2304190 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content65% 
IMG OID641547175 
Productdiguanylate cyclase 
Protein accessionYP_001668287 
Protein GI167033056 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.645943 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCACACG CCAAGCATGG ATTGCGCCTG GATTTACGTA CACTCATTCT GGTGCTCTGC 
GCCCTTACCG CAGTGGTCAT GCTGTGCGCC AGCTACTTCG CCAGCTACCG AGTGCAGCGC
CAACTGCTGA TCGACAACGC GCTGGAAGCC AACCGGGTGT ATGCGACGAA GCTGGCCAGC
ATCACCGAAA CCTTCATCGG CAACGCCCTG CAGCAACTGG CGTTCAGCGC CAGCCTGCAG
GGCCGTCAGC TGAGCGATGG TGCTGCGCTG CAGGTGGAAA CCGAGCGTGT GCTGGGCCAG
AGCATGGCCT TCAACTCCAC CTTCGTGATC GACGCCAACG GCGTGCTGTT GGCAGTATCC
CCAGCCCCGC TGCGCCACCT GGTCGGCACC CACGTGCAGT CGCCCGGTGC CCAGGAAGCC
TTGCACGAAC GCCGTCCACT GGTTTCCACG CCCTACCTGT CGGCGGCCGA CAACCTGGTG
GTGGCGCTCT CGCAACCCAT TTTCGACAGC AACGGCCGCT ACCTGGGCTA TGTGGGCGGC
AGCCTGTACC TGCGTGAGCG CAATATCCTC AACAGCCTGC TGGGCGAGCA CTTCTACAAG
GACGGTTCTT ACCTGTACGT AGTCGATCGC AACCGCCGCC TGCTGTACCA CCCCAACAGC
GAACGGGTAG GCACCGTGGT GGAGGGCAAC GCGCTGGTAG ACCAGTTGGC GACACTGGAC
AGCGGTACTC GGCAACTGAC CAACAGCCTG GGCGTGGAAA TGCTCGCCGG CTTCGCCACC
GTACCCAGCG CCGGCTGGGG CGTGGTCGCG CAGCAGCCCT TGGCGCAGAC GGTGACGCCA
CTGAGCCACC TGGTGCTGAA CGTCGTCGGC ACTTCGGCAC CCTTGGCGCT GGTTGGCAGC
CTGCTGCTGT GGTGGTTGGC CATGACCATC GCCCGGCCGC TGTGGCAACT GGCCGCGGGT
GCCCGCTCGA TGGACCGCGC CGGCACCGCC GAACATTTGC ATCAGGTGCG GGCCTGGTAC
TTCGAGGCAG CAGAACTCAA GCGCGCGTTG CTGTTCGGCT TGAACTTGCT GCAAGAGCGG
ATTGGCCGGC TCAATCGTGA CGCCCAGACC GACCCGCTGA CGGGCCTGGG CAACCGCCGC
AGCCTGGAGT TCAGCCTGTC GCTGCTGGAA GCCGAAGGAA GAGCATTTGC GGCCATCGAG
CTGGATATCG ATCACTTCAA GCGGGTCAAC GACAACCATG GGCATGAGGT GGGTGATCAG
GTGCTGCGCC GGCTGGCGGA ATTGATGCGC CGTTGTTGCC GCGAAGGTGA CCTGCTTTGC
CGCACCGGGG GCGAAGAATT CCTGATGCTG CTGCCAGGGG CCAGCCTGGA AGTGGCGGCG
GCGGTGGCCG AACGGCTGCG GGTGACAGTG CAGGACACGC CTGTGGAGCC CGTGGGGGCA
GTGACGATTT CGCTGGGGGT GGCGCGCTGG GATGGTGATG CGGGCAGCAA GCCTATGGAA
GCTTTGGGCC TGGCGGACCG GGCGCTGTAC CAGGCCAAGC AGCAAGGTCG CAACCGGGTG
GCCATCGCCT GA
 
Protein sequence
MPHAKHGLRL DLRTLILVLC ALTAVVMLCA SYFASYRVQR QLLIDNALEA NRVYATKLAS 
ITETFIGNAL QQLAFSASLQ GRQLSDGAAL QVETERVLGQ SMAFNSTFVI DANGVLLAVS
PAPLRHLVGT HVQSPGAQEA LHERRPLVST PYLSAADNLV VALSQPIFDS NGRYLGYVGG
SLYLRERNIL NSLLGEHFYK DGSYLYVVDR NRRLLYHPNS ERVGTVVEGN ALVDQLATLD
SGTRQLTNSL GVEMLAGFAT VPSAGWGVVA QQPLAQTVTP LSHLVLNVVG TSAPLALVGS
LLLWWLAMTI ARPLWQLAAG ARSMDRAGTA EHLHQVRAWY FEAAELKRAL LFGLNLLQER
IGRLNRDAQT DPLTGLGNRR SLEFSLSLLE AEGRAFAAIE LDIDHFKRVN DNHGHEVGDQ
VLRRLAELMR RCCREGDLLC RTGGEEFLML LPGASLEVAA AVAERLRVTV QDTPVEPVGA
VTISLGVARW DGDAGSKPME ALGLADRALY QAKQQGRNRV AIA