| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1982 |
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| Symbol | metH |
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| ID | 5869772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2228423 |
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| End bp | 2232130 |
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| Gene Length | 3708 bp |
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| Protein Length | 1235 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547109 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001668221 |
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| Protein GI | 167032990 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0368395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.238169 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACC GCAGCGCTCG TCTCCAAGCA CTCCAGAACG CCCTCAAAGA GCGCATCCTG
ATCCTCGACG GCGGCATGGG TACTATGATC CAAAGCTACC GTCTCGAGGA ACACGACTAT
CGTGGCACGC GTTTCGCCGA TTGGCCAAGC GATGTCAAAG GTAACAACGA CCTGTTGCTG
CTCAGCCGCC CGGACGTGAT CGCCGCCATC GAGAAAGCCT ACCTGGATGC CGGCGCCGAT
ATTCTCGAAA CCAACACCTT CAACGCCACG CAGATTTCCC AGGCCGACTA CGGCATGGAA
TCGCTGGTTT ACGAGCTGAA CGTAGAAGGT GCGCGCATCG CGCGCCAGGT GGCCGATGCC
AAGACCCTGG AGACGCCAAA CAAGCCGCGC TTCGTCGCCG GCGTGCTTGG CCCCACCAGC
CGCACCTGCT CGATTTCCCC GGACGTCAAC GACCCCGGCT ACCGCAACGT CACCTTCGAC
GAACTGGTAG AAAACTACAT CGAGGCCACC CGTGGCCTGA TCGAGGGCGG CGCCGACCTG
ATCCTGATCG AAACCATCTT CGACACCCTC AACGCCAAGG CGGCGATCTT CGCCGTGCAG
CAAGTGTTCG AAGACGACAA CGTCGAACTG CCGATCATGA TCTCCGGCAC CATCACCGAC
GCCTCCGGCC GTACCCTTTC GGGCCAGACC ACCGAAGCAT TCTGGAACTC GGTGCGCCAC
GCCAAGCCGA TTTCCGTGGG CCTGAACTGC GCCCTCGGCG CCAAGGACCT GCGCCCGTAC
CTGGAAGAAC TGTCGACCAA AGCCGATACC CATGTATCCG CCCACCCCAA CGCCGGCCTG
CCCAACGCCT TTGGTGAATA CGACGAAACC CCGGCCGAGA TGGCCGAAGT CGTCGAAGAA
TTCGCCGCCA GCGGCTTCCT CAACATCATC GGCGGTTGCT GCGGCACCAC CCCGGGGCAC
ATCCAGGCCA TCGCCGAAGC CGTGGCCAAG TACAAGCCGC GCGAGATCCC GGAAATCGCC
AAGGCCTGCC GCCTGTCGGG CCTGGAACCG TTCACCATCG ACCGCCAGTC GTTGTTCGTC
AACGTGGGCG AGCGCACCAA CATCACCGGC TCCGCCAAGT TCGCCCGGCT GATCCGAGAA
GAGAACTACA CCGAAGCCCT GGAAGTCGCC CTGCAGCAGG TCGAAGCCGG CGCCCAGGTG
ATCGACATCA ACATGGACGA AGGGATGCTC GATTCCCAGG CCGCCATGGT CCGCTTCCTC
AACATGATCG CTGGCGAGCC GGATATCTCG CGCGTACCGA TCATGATCGA CTCCTCCAAG
TGGGACGTGA TCGAAGCGGG CCTCAAGTGC ATCCAGGGCA AGGGCATCGT CAACTCCATT
TCCATGAAGG AAGGTGTCGA GCAGTTCAAG CACCACGCAC GCCTGTGCAA GCGCTACGGC
GCTGCCGTGG TGGTGATGGC ATTCGACGAG GTCGGCCAGG CCGACACCGC TGCGCGCAAG
AAGGAAATCT GCAAGCGCAG CTACGACATC CTGGTCAACG AAGTGGGCTT CCCGCCGGAA
GACATCATCT TCGACCCGAA CATCTTCGCC GTCGCCACCG GTATCGAAGA GCACAACAAC
TATGCCGTCG ACTTCATCGA GGCCTGTGCC TACATCCGTG ACCACCTGCC TCATGCGCTG
AGCTCGGGCG GGGTGTCCAA CGTGTCGTTC TCGTTCCGCG GCAACAACCC GGTGCGCGAG
GCGATTCACT CGGTGTTCTT GTTCCACGCC ATCCGCAACG GCCTGACCAT GGGTATCGTC
AACGCCGGCC AATTGGAGAT CTACGACGAG ATCCCGGCCG AGCTGCGCGA AAAAGTCGAG
GACGTGGTGC TTAACCGCAC GCCGGAAGGC ACCGATGCAC TGCTGGCCAT CGCCGACGAC
TACAAAGGCG GCGGCGCCAC CAAGGAAGTC GAGAACGAAG CCTGGCGTTC GCTGCCGGTC
GACAAACGCC TGGAGCATGC CTTGGTCAAG GGCATCACCG CGCACATCGT CGAGGACACC
GAGGAGTGCC GCCAGCAATG CGCACGCCCG ATCGAGGTCA TCGAAGGCCC GCTGATGAGC
GGCATGAACG TGGTCGGCGA CCTGTTCGGC GCAGGCAAGA TGTTCCTGCC CCAAGTGGTC
AAGTCAGCTC GCGTGATGAA GCAGGCGGTG GCGCACCTGA TCCCGTTCAT CGAGGCCGAA
AAAGGCGACA AGCCCGAAGC CAAGGGCAAG ATTCTGATGG CCACGGTCAA AGGCGACGTG
CACGACATCG GCAAGAACAT CGTCGGCGTG GTGCTGGGCT GCAACGGCTA CGACATCGTC
GACCTTGGCG TGATGGTGCC GGCCGAGAAG ATTCTGCAAA CCGCTCGCGA CGAGAAGTGC
GACATCATCG GTTTGTCTGG CCTGATCACC CCGTCGCTGG ACGAAATGGT CCATGTCGCC
CGCGAAATGC AGCGCCAGGG CTTCGAGCTA CCGCTGATGA TTGGCGGCGC CACCACCTCC
AAGGCGCACA CTGCGGTGAA GATCGAGCCC AAGTACAGCA ACGACGCGGT CATCTACGTC
ACCGACGCCT CGCGCGCGGT CGGCGTGGCG ACCCAACTGC TGTCCAAAGA GCTCAAGCCG
GGCTTCGTCG AAAAAACCCG CCTGGAATAC GTGGACGTGC GCGAGCGCAC CGCCAACCGC
AGCGCCCGCA CCGAACGCCT CAGCTACACC CAGGCCATCG CCGCCAAACC GCAGTACGAC
TGGGCCGGCT ACCAGCCGGT AGAGCCCACC TTCACCGGCG TCAAGGTGCT GGAAAACATC
GACTTGCGCA CCCTGGCTGA ATACATCGAC TGGACCCCGT TCTTCATTTC CTGGGACCTG
GCCGGCAAGT TCCCGCGTAT CCTCACCGAC GAAGTGGTCG GCGAGGCGGC CACCGCGCTT
TACCAGGATG CCCGCGAGAT GCTCGACAAG CTGATCGACG AGAAGCTGAT CAGCGCCCGC
GCGGTGTTCG GCTTCTGGCC GGCCAACCAG GTGGCCGATG ACGACATCGA AGTGTACGGC
GAGGACGGCC AGACGCTGGC CACCCTGCAC CACCTGCGCC AGCAGACCAT CAAGCCGGAC
GGCAAGCCCA ACTGGTCGCT GGCCGACTTC GTCGCGCCAA AAGCCAGCGG CGTCACCGAC
TATGTGGGTG GCTTCATCAC CACCGCCGGC ATCGGTGCCG AGGAAGTGGC CAAGGCCTAC
CAGGACAAGG GCGACGACTA CAGCTCGATC ATGGTCAAGG CCCTGGCCGA CCGCCTGGCC
GAAGCCTGTG CCGAGTGGCT GCACGAGCAG GTACGTAAAG AGCACTGGGG TTATGCCCGC
GACGAGCACC TGGACAACGA GGCGCTGATC AAGGAACAGT ACAGCGGTAT CCGGCCTGCC
CCGGGCTACC CGGCCTGCCC GGACCACACC GAGAAGGAGA CCTTGTTCCG TTTGCTCGAT
GGCACTGCCA TTGGTGAAAC CGGGCCAAGC GGCGTGTTCC TCACCGAACA CTTCGCGATG
TTCCCCGCAG CGGCGGTCAG CGGCTGGTAC TTCGCCCACC CACAGGCGCA GTATTTTGCC
GTGGGCAAGG TTGACAAGGA CCAGATCGAG CGCTACAGCG CGCGCAAAGG CCAGGATGTA
AGCGTCAGCG AGCGCTGGTT GGCGCCAAAC CTCGGGTACG ACAGCTAA
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| Protein sequence | MSDRSARLQA LQNALKERIL ILDGGMGTMI QSYRLEEHDY RGTRFADWPS DVKGNNDLLL
LSRPDVIAAI EKAYLDAGAD ILETNTFNAT QISQADYGME SLVYELNVEG ARIARQVADA
KTLETPNKPR FVAGVLGPTS RTCSISPDVN DPGYRNVTFD ELVENYIEAT RGLIEGGADL
ILIETIFDTL NAKAAIFAVQ QVFEDDNVEL PIMISGTITD ASGRTLSGQT TEAFWNSVRH
AKPISVGLNC ALGAKDLRPY LEELSTKADT HVSAHPNAGL PNAFGEYDET PAEMAEVVEE
FAASGFLNII GGCCGTTPGH IQAIAEAVAK YKPREIPEIA KACRLSGLEP FTIDRQSLFV
NVGERTNITG SAKFARLIRE ENYTEALEVA LQQVEAGAQV IDINMDEGML DSQAAMVRFL
NMIAGEPDIS RVPIMIDSSK WDVIEAGLKC IQGKGIVNSI SMKEGVEQFK HHARLCKRYG
AAVVVMAFDE VGQADTAARK KEICKRSYDI LVNEVGFPPE DIIFDPNIFA VATGIEEHNN
YAVDFIEACA YIRDHLPHAL SSGGVSNVSF SFRGNNPVRE AIHSVFLFHA IRNGLTMGIV
NAGQLEIYDE IPAELREKVE DVVLNRTPEG TDALLAIADD YKGGGATKEV ENEAWRSLPV
DKRLEHALVK GITAHIVEDT EECRQQCARP IEVIEGPLMS GMNVVGDLFG AGKMFLPQVV
KSARVMKQAV AHLIPFIEAE KGDKPEAKGK ILMATVKGDV HDIGKNIVGV VLGCNGYDIV
DLGVMVPAEK ILQTARDEKC DIIGLSGLIT PSLDEMVHVA REMQRQGFEL PLMIGGATTS
KAHTAVKIEP KYSNDAVIYV TDASRAVGVA TQLLSKELKP GFVEKTRLEY VDVRERTANR
SARTERLSYT QAIAAKPQYD WAGYQPVEPT FTGVKVLENI DLRTLAEYID WTPFFISWDL
AGKFPRILTD EVVGEAATAL YQDAREMLDK LIDEKLISAR AVFGFWPANQ VADDDIEVYG
EDGQTLATLH HLRQQTIKPD GKPNWSLADF VAPKASGVTD YVGGFITTAG IGAEEVAKAY
QDKGDDYSSI MVKALADRLA EACAEWLHEQ VRKEHWGYAR DEHLDNEALI KEQYSGIRPA
PGYPACPDHT EKETLFRLLD GTAIGETGPS GVFLTEHFAM FPAAAVSGWY FAHPQAQYFA
VGKVDKDQIE RYSARKGQDV SVSERWLAPN LGYDS
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