| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1967 |
|---|
| Symbol | |
|---|
| ID | 5869757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2212474 |
|---|
| End bp | 2213247 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547094 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001668206 |
|---|
| Protein GI | 167032975 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.397797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0346972 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAGC CGCAGCGTGA ATTGCTGGTG GAGGTCGATG GGTGGACCTG GGAAGTGGGT
AGCCGCGCGA CGGACTACCC GAGCGACTGG TTCATCGAGC CCCATCACCA TGCCAAGCAT
CAACTGATCT ATGCCATCAA AGGCCTGATG ATCGTCGAGT CCGGCAACGA ATGCTGGACT
GTGCCGCCCA GCCGCGGTGT ATGGATGCCT TGCGGCCAGG TGCACGCCAT CCGCTGTGTC
GGTGATGTGA AAATGCGCAG CGTGTTCGTG CGCACCGACG CGGCGGCGGG CCTGCCCCTG
CAGAGCAAGG CCATCAGCAT TTCGCCGCTG CTCAGTGAGC TGATCAAGGC CTCGGTGGGC
TTTACCGCGC CGTTTGCCGA GGACTCGCGC GAAGCCCGGG TGATGCGCCT GATCCTCGAC
GAAATCTGCG TACTGCCCAC CTTGCCGCTG AAGCTGTCGC AGCCCAGCGA CAAACGCTTG
CGGGTGATCT GCTCGGCGTT GCATGAACGG CCCGACGATA ATGCCACCGT AGCCGACTGG
GGCCTGTATC TGGGGGTGGA CGAAAAGACC ATCCAACGGT TATTCCGCAA GGAAACCGGC
ATGACCTTCG GCCAGTGGCG CCAACAGGCG CGACTGATGC AGGCGCTGGA ACGGATTGCC
CTGGGCGAGC GGATCATCGA TGTGGCGGGC GCACTGGGGT ATGACAGCCC CAGTGCCTTC
GCCAGCATGT TCAAGCGCCA GTTCGGCACT ACGCCGAGCC AGTTCTTCAA ATAG
|
|---|
| Protein sequence | MVKPQRELLV EVDGWTWEVG SRATDYPSDW FIEPHHHAKH QLIYAIKGLM IVESGNECWT
VPPSRGVWMP CGQVHAIRCV GDVKMRSVFV RTDAAAGLPL QSKAISISPL LSELIKASVG
FTAPFAEDSR EARVMRLILD EICVLPTLPL KLSQPSDKRL RVICSALHER PDDNATVADW
GLYLGVDEKT IQRLFRKETG MTFGQWRQQA RLMQALERIA LGERIIDVAG ALGYDSPSAF
ASMFKRQFGT TPSQFFK
|
|---|
| |