| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1956 |
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| Symbol | |
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| ID | 5869746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2200167 |
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| End bp | 2202413 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641547083 |
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| Product | GAF sensor signal transduction histidine kinase |
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| Protein accession | YP_001668195 |
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| Protein GI | 167032964 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.727974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.121547 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCAG ACAACACGCT GGCAGACGCC ATGGAGCGCT GTGCCCAAGA ACCGATCCAC
CTGCCGAGCA GCATCCAGCC TCATGGCTTT CTGCTGGTAC TGGACGCCAC CGACCTGCGC
GTGCTGCAGG CCAGTGAAAA CGTCGAGCAC TGGCTGGGCT TGCCGGCCCA GGAGCTGATC
GGTTGCCCCT TCGCCAATCT GGTCAGCGAC GGTTTCGACC TGCACGCGCA CCTCGCACGG
CTGCCCGAAG ATGAAATTTT CCCCTTTCAC ATCGGCGACG TGCGCTTGCG CCAAGGCGCG
CCCCACAGTG AGCCGCTGCA CTTGCTGGCC CACTGTCACG ACGAAGTACT GATTGCCGAG
TTCGAACCCC CGCGCCTGCC ACCGGAGCTG GCCGGGCAAG GCGACTACTA CCCATTGGTG
CGCAACTTCG TCGGTAGCCT GCAACTGGCC ACAAGCCTTG AGGATCTGCT GCAACAAACG
GTGGTGCAGC TCAAACGCAT CACCGGCTTT GGGCGGGTCA AGGCGTACCG GTTCGATGCC
GATGGCAACG GTCAGGTGCT GGCGGAGGTG GCCGACCCTG GCTACCCCAG CTATCTGGGC
CTGTGTTTCC CGGCCGCGGA CATCCCGCGC CAGGCGCGCG AGCTGTACCG GATCAACCGC
ATCCGCGTGA TCGAGGATGC CAACTATCAG TCCTCCCCCC TGTTACCGGC CGCCAACCCT
CGCACCGGCA AGGCACTGGA CATGAGCTTC GCTGCACTGC GCAGCGTGTC GCCGATACAC
CTGCAGTACA TGCGCAACAT GGGCACGCTG GCCTCGATGT CGCTGTCGAT CGTGGTCGAT
GGCGAGCTGT GGGGGCTGGT GTCGTGCCAC CACCATCAGC CACGCCCGGT GGACTTGCGT
ACCCGCACAG CCTGCGAGCT GCTGGCCAGC GTGCTGTCGT TGCAGATCGA GTCCCGCGAG
GCCCATGCCA GCACGCGCAA GTTGCTGGCA CTGCGTCAAC ACATCGTGCG CATGATCTCG
TCCATGGCTG ACCACGACAG CGTCAGCGAC GGCCTGCGCG AACTGCCCCA GGTTTTGTTG
GCCTTTGCCG GTGCCCAAGG TGCGGCGGTA ATCTCGGCCG AACGCTGTGA CCTGATCGGC
CAGACCCCAC CCGAAGCCCA GGTGACCGCG CTGGTGCACT GGCTTGGCCA GCGTGGCGAA
GACAGCGTGT TCCAAAGTGA CAACCTGCGC CGCGACATCA CAGACCTGCC CGAACTGGCA
ACCCATGCCG GTGGTGTGCT GGCGGTGGCC ATCTCGCAAA TCCACTCGCA CTACCTGCTG
TGGTTCCGCC CCGAGCAAGT GCGTACGGTA AACTGGGCCG GCCAGCCGAC CAAGCAGGTG
GGGCCACAGG GCAACCTCCA CCCACGACAC AGTTTTGAAC GCTGGCAGGA AGAACTGCGC
GGCTATTGCG AGCCCTGGGA CCCGCTGGTG ATCGAGGGCG TGATGGAACT GCGCACCGCG
GTGCTGGGCA TCGTCCTGCG CAAGGCCGAA GAGCTGGCGC AACTGGCGGG CGAGTTGCGC
CGCTCGAACA AAGAGCTCGA GGCGTTCTCC TACAGTGTTT CCCATGACTT GCGCGCGCCC
CTACGGCACA TCGCCGGCTA TACCGAGCTG CTTGGCGAAA TCGAAGGCCA AGACCTGAGC
GAGCGCGGCA AACGCTTTTT GCAGCACATC GGCGAAGCGG CGCACTTTGC CGGCAGCCTG
GTCGACAACC TGCTCAACTT CTCGCAGATG GGCCGCTCGG CCTTGCGCTT GTCCGACGTC
GACCTCAACG CACTGGTCGA GGCCATTCGC AGCGAATTGA CCCCAGATTA CGAAGGCCGC
GCAATCGTTT GGGACATCGC CCCGCTGCCC AAGGTGATCG GCGACCCGGC GTTCATCAAC
ATGGCATTGC ACAACCTTAT CGCCAATGCC ATCAAGTACA CGCGCGGGCG TAACCCTGCC
CGCATCGGGA TCAGTGCCGT ACAGCACCCT GGCGAAACCG AGGTCTGCAT CCGCGACAAT
GGCGTGGGCT TCGACATGGC CTATGCCAAC AAGCTGTTCG GCGTATTCCA GCGCCTGCAC
CGCATGGAAG ACTTCGAAGG CACAGGGATT GGCCTGGCGA GCGTGCGCCG TATCATCGAG
CGCCATGATG GCCGGGTCTG GGCCACTGGC CAGATCGAGC AAGGCGCCAG CTTCCACTTC
ACCCTACCCC GAAACACTGC TACCTGA
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| Protein sequence | MTADNTLADA MERCAQEPIH LPSSIQPHGF LLVLDATDLR VLQASENVEH WLGLPAQELI
GCPFANLVSD GFDLHAHLAR LPEDEIFPFH IGDVRLRQGA PHSEPLHLLA HCHDEVLIAE
FEPPRLPPEL AGQGDYYPLV RNFVGSLQLA TSLEDLLQQT VVQLKRITGF GRVKAYRFDA
DGNGQVLAEV ADPGYPSYLG LCFPAADIPR QARELYRINR IRVIEDANYQ SSPLLPAANP
RTGKALDMSF AALRSVSPIH LQYMRNMGTL ASMSLSIVVD GELWGLVSCH HHQPRPVDLR
TRTACELLAS VLSLQIESRE AHASTRKLLA LRQHIVRMIS SMADHDSVSD GLRELPQVLL
AFAGAQGAAV ISAERCDLIG QTPPEAQVTA LVHWLGQRGE DSVFQSDNLR RDITDLPELA
THAGGVLAVA ISQIHSHYLL WFRPEQVRTV NWAGQPTKQV GPQGNLHPRH SFERWQEELR
GYCEPWDPLV IEGVMELRTA VLGIVLRKAE ELAQLAGELR RSNKELEAFS YSVSHDLRAP
LRHIAGYTEL LGEIEGQDLS ERGKRFLQHI GEAAHFAGSL VDNLLNFSQM GRSALRLSDV
DLNALVEAIR SELTPDYEGR AIVWDIAPLP KVIGDPAFIN MALHNLIANA IKYTRGRNPA
RIGISAVQHP GETEVCIRDN GVGFDMAYAN KLFGVFQRLH RMEDFEGTGI GLASVRRIIE
RHDGRVWATG QIEQGASFHF TLPRNTAT
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