| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1951 |
|---|
| Symbol | |
|---|
| ID | 5869740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2193409 |
|---|
| End bp | 2195298 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547077 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001668190 |
|---|
| Protein GI | 167032959 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0419294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACC AGCACAGCTA CGCCCATTCC ATTTCCGACC CTGCCGCTTT CTGGGCGGAA
CAGGCCGCAC ACCTGGCCTG GCACCGCAAG CCTGCCCTGA CTTTGCAAGA CCACGCCGAC
GGTACCCATA GTTGGTTCGC AGACGGCCGC CTTAACAGCT GCTACCTGGC CCTCGATTAC
CAGATCGAGC AAGGCCGTGG CGAGCAATTG GCGCTGATCT ACGATTCGCC GGTGACGGGC
GTGCAGCAGG CGTATACCTA TAACCAGTTG CGCGATGAAG TGGCGCGCCT GGCTGGCTTG
CTGCGCCAGC TGGGGGTGAG CAAGGGCGAT GGCGTGATCA TCTACATGCC CATGGTGCCG
CAGGCAGCCA TGGCCATGCT GGCCTGTGCG CGGATTGGCG CGGTGCATTC GGTGGTGTTC
GGTGGCTTTG CCGCCAACGA ACTGGCTTTG CGCATCGATG ATGCCCGGCC CACGCTGCTG
CTGACGGCCT CCTGCGGGCT GGAGTTCGAT CGCGTGATTG CGTACAAGCC GCTGGTCGAC
CGCGCCCTGC AACTGGCCCG GCACCAACCG CGCAATGTGC TGGTGCTGCA GCGGCCACAG
GTGCAGGCCG ACCTGCAGCC AGGCCGCGAC CTGGACTGGC AGGCGGCCTT GACCGGCGCC
GAGCCGGTGG CCCCAGTCGA GTTGGATGCC GGCGACCCGC TGTACATCAT GTATACCTCG
GGTACCACCG GCAAACCCAA AGGCATCGTG CGGGAGAACG GTGGCAATGC CGTGGCGCTG
TGCTATGCCA TGCGCCATAT CTATGGCATG CAGGCCGGCG ATGTGTGGTG GGGCATATCT
GATGTGGGCT GGGTGGTCGG CCATTCGCTG ATCGTTTACG GGCCGTTGAT GAGCGGCTGT
ACCACTGTGT TCTACGAAGG CAAGCCGATC CGCACCCCGG ATGCCTCGGC CTACTGGCGG
GTGGTGGAGC AATACAAGGT CAATGCGTTG TTCTGTGCGC CCACCGCCAT GCGTGCCATC
CGCAAGGAAG ACCCGGAAGG CGAGCTGATC CGCAAACATG ACCTCAGCTC GCTGCGCCAA
TTGTTCCTGG CGGGTGAGAA GCTCGATTCC AGCACCCACG AATGGCTGGA ACGGGTCAGT
GGCAAGCCTG TGCACGACCA CTGGTGGCAG ACCGAGACCG GCTGGCCGGT CACTGCGCCG
TGTGTCGGGC TGGAGGGGAG CGCCGCGAAG CCGGGATCGA GCAACCGGGC GGTACCCGGC
TACAACGTTC GCGTGCTGGA CGACGAAGGC CGCTTGCTCG GGCCCAACCA TCAGGGTTCG
ATCGTGATCG CCCTGCCATT GCCACCTGGT TGTAGCCAGA CACTGTGGGG CGACCACGAG
CGCTACCTGC AGGCGTACCT GCGCACCTAC CCGGGGTATT ACCACACCGG TGACGGCGGC
TACCTGGACG ATGACGGTTT CGTCTACATC ATGGGGCGCA CCGATGACGT GATCAATGTG
TCGGGGCACC GGTTGTCTAC CGGCGAAATG GAGGACCTGG TGGCCTGCCA CCCGGCGGTG
GCCGAGTGTG CGGTGGTTGG CGTGCACGAT GAAATCAAGG GGCAAGTGCC GTTGGCACTT
GTTGTGCTCA AGGACGGCGA GGGCATTGCC GAGGCGCAAC TGCTGGTGGA CCTGGTGGGC
AGTGTGCGCG AGGCGATTGG CCCGCTGGCC TGTTTCAACC GGGTTCGGTT GGTGAAGCGG
CTCCCCAAGA CCCGCTCGGG GAAAATTTTG CGTGCGGTGC TGCGCAAGAT CGCCGACGGG
CAGGACTATG CGCCGCCTTC GACCCTGGAT GACCCGGCGG TGCTGGGGGA GATCGAGGCG
GTGCTGGCGG ATTTACCCAG AGCCGGTTGA
|
|---|
| Protein sequence | MSYQHSYAHS ISDPAAFWAE QAAHLAWHRK PALTLQDHAD GTHSWFADGR LNSCYLALDY
QIEQGRGEQL ALIYDSPVTG VQQAYTYNQL RDEVARLAGL LRQLGVSKGD GVIIYMPMVP
QAAMAMLACA RIGAVHSVVF GGFAANELAL RIDDARPTLL LTASCGLEFD RVIAYKPLVD
RALQLARHQP RNVLVLQRPQ VQADLQPGRD LDWQAALTGA EPVAPVELDA GDPLYIMYTS
GTTGKPKGIV RENGGNAVAL CYAMRHIYGM QAGDVWWGIS DVGWVVGHSL IVYGPLMSGC
TTVFYEGKPI RTPDASAYWR VVEQYKVNAL FCAPTAMRAI RKEDPEGELI RKHDLSSLRQ
LFLAGEKLDS STHEWLERVS GKPVHDHWWQ TETGWPVTAP CVGLEGSAAK PGSSNRAVPG
YNVRVLDDEG RLLGPNHQGS IVIALPLPPG CSQTLWGDHE RYLQAYLRTY PGYYHTGDGG
YLDDDGFVYI MGRTDDVINV SGHRLSTGEM EDLVACHPAV AECAVVGVHD EIKGQVPLAL
VVLKDGEGIA EAQLLVDLVG SVREAIGPLA CFNRVRLVKR LPKTRSGKIL RAVLRKIADG
QDYAPPSTLD DPAVLGEIEA VLADLPRAG
|
|---|
| |