| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1925 |
|---|
| Symbol | |
|---|
| ID | 5869714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2164013 |
|---|
| End bp | 2165089 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641547051 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_001668164 |
|---|
| Protein GI | 167032933 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000000690184 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000000000985701 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATT TACCGATCGA TGACTTGAAC GTTGCCTCCA ACGAGACCCT GATCACCCCT
GATCAGCTCA AGAAGGAAAT CCCCCTCAGC GCCAAGGCCC TGCAGACCGT GACTGCCGGC
CGTGAAGTGG TGCGCAATAT TCTCGACGGC AAGGACCATC GCCTGTTCGT CGTGGTCGGC
CCTTGCTCGA TCCACGACAT CAAGGCCGCC CACGAGTATG CCGAGCGCCT GAAAGTGCTG
GCCGAAGAAG TGTCCGATAC GCTGTACCTG GTCATGCGCG TGTACTTCGA AAAGCCACGC
ACCACCGTCG GCTGGAAAGG CCTGATCAAC GACCCATACC TGGATGACTC GTTCAAGATC
CAGGACGGCC TGCACATCGG CCGCCAGCTG CTGCTGGACC TGGCTGAAAT GGGCCTGCCG
ACTGCCACCG AGGCGCTCGA CCCGATTTCC CCGCAATACC TGCAAGACCT TATCAGCTGG
TCGGCCATTG GTGCTCGCAC CACCGAGTCG CAAACCCACC GCGAGATGGC CTCGGGCCTG
TCCTCGGCGG TCGGCTTCAA GAACGGCACC GACGGCGGCC TGACCGTTGC CATCAACGCT
TTGCAGTCGG TGTCCAAGCC GCATCGCTTC CTGGGTATCA ACCAGGAAGG CGGTGTATCG
ATCGTTACCA CCAAGGGCAA CCCTTACGGC CACGTGGTAC TGCGCGGCGG CAACGGCAAG
CCGAACTACG ACTCGGTCAG CGTTGCCCTG TGCGAACAGG ACCTGGCCAA GGCCAAGATC
AAGGCCAACA TCATGGTCGA CTGCAGCCAT GCCAATTCCA ACAAGGACCC GGCCCTGCAA
CCGCTGGTCA TGGAAAACGT TGCCAACCAG ATCCTCGAAG GCAACCAGTC GATCATCGGC
CTGATGGTCG AAAGCCACCT GAACTGGGGC TGCCAGTCGA TACCGAAAAA CCTGGACGAG
CTGCAGTATG GTGTGTCGAT CACCGACGCC TGCATCGACT GGTCGGCTAC CGAGAAGACC
CTGCGCAGCA TGCGTACCAA GCTGAAAGAT GTGCTGCCGC AGCGCAAGCG CGGCTAA
|
|---|
| Protein sequence | MADLPIDDLN VASNETLITP DQLKKEIPLS AKALQTVTAG REVVRNILDG KDHRLFVVVG
PCSIHDIKAA HEYAERLKVL AEEVSDTLYL VMRVYFEKPR TTVGWKGLIN DPYLDDSFKI
QDGLHIGRQL LLDLAEMGLP TATEALDPIS PQYLQDLISW SAIGARTTES QTHREMASGL
SSAVGFKNGT DGGLTVAINA LQSVSKPHRF LGINQEGGVS IVTTKGNPYG HVVLRGGNGK
PNYDSVSVAL CEQDLAKAKI KANIMVDCSH ANSNKDPALQ PLVMENVANQ ILEGNQSIIG
LMVESHLNWG CQSIPKNLDE LQYGVSITDA CIDWSATEKT LRSMRTKLKD VLPQRKRG
|
|---|
| |