| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1893 |
|---|
| Symbol | |
|---|
| ID | 5869678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2131397 |
|---|
| End bp | 2132491 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641547015 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001668132 |
|---|
| Protein GI | 167032901 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.663056 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGG TGCTGGAGCA GGTCAGCCGC AGTGTCGACA ACCAGCCCTG GGTCGTCGAT
GCCTCACTGC GTTTCGAGCC CGGTTCGTTC AACGTGCTGT TGGGCCGTAC CCTGGCGGGC
AAGACCAGCT TGATGCGCCT GATGGCCGGG CTCGACCGCC CGGACCGGGG GCGGGTGCTG
ATGGACGGCC AGGACGTCAC CGGCGTGCCG GTGCGCCAGC GCAATGTGTC GATGGTGTAT
CAGCAGTTCA TCAATTACCC GACCTTGAGC GTGTACGAGA ACATCGCCTC GCCGCTGCGC
CAGGCGCGCA TGGCCGAGGA CCAGATCCGC CGCCGGGTGC AGGAAACCGC CGAGATGCTG
CGCATCGAAA CCTACCTGCA GCGCCTGCCG CTTGAGCTTT CCGGTGGCCA GCAGCAGCGC
ACGGCGATGG CCAGGGCGTT GGTCAAGGAC GCCTCGTTGA TCCTGTTCGA CGAGCCATTG
GTCAACCTCG ACTACAAGTT GCGCGAGGGC CTGCGCCAAG AGCTGCGTGA GCTGTTCGCG
GCCCGCCATT GCATTGCTGT GTACGCTACC ACCGAGCCCA ACGAGGCGCT GGCGCTGGGC
GGCACCACTA CCCTGGTGCA CGAAGGCCGC ATCGTGCAAA GCGGGCCCAC CGCCGAGGTG
TATCAGCGCC CGTGCAGCGT GCTGGCTGCC GAGTTGTTTT CCGAGCCGCC GATCAACCTG
GTGCCCGGCC GTATCAGTGG CAACGAGGTG AGCCTGGCCC AGGCCGTGCA CTTTGCCCGC
AATGCCGATT TGCAGCCGTT GGCCGAGGGC GACTACCGCT TTGGCGTGCG CCCCAGCCAT
ATCACCCTGG TGCCGGCCCA TGACGATGAC CTGGAATTGG CGGTGCTGGT GGAACTGGCA
GAGATCAGTG GTTCAGAAAC CTTTCTGCAT GTGCGCAACG AATTCTGGCG CATGGTCCTG
CACCTGCCTG GGGTGCACGA ATACCAGGTG GATACGCCGA TCCGTGTGTT CATCCCCATG
CACAAGCTGT TCGTCTTCGA CAGCGCCGGG GTGTTGGTGC AGGCCCCGGG GCTGCGCCAG
GCAAGGAGAG GGTAA
|
|---|
| Protein sequence | MSLVLEQVSR SVDNQPWVVD ASLRFEPGSF NVLLGRTLAG KTSLMRLMAG LDRPDRGRVL
MDGQDVTGVP VRQRNVSMVY QQFINYPTLS VYENIASPLR QARMAEDQIR RRVQETAEML
RIETYLQRLP LELSGGQQQR TAMARALVKD ASLILFDEPL VNLDYKLREG LRQELRELFA
ARHCIAVYAT TEPNEALALG GTTTLVHEGR IVQSGPTAEV YQRPCSVLAA ELFSEPPINL
VPGRISGNEV SLAQAVHFAR NADLQPLAEG DYRFGVRPSH ITLVPAHDDD LELAVLVELA
EISGSETFLH VRNEFWRMVL HLPGVHEYQV DTPIRVFIPM HKLFVFDSAG VLVQAPGLRQ
ARRG
|
|---|
| |