| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1889 |
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| Symbol | |
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| ID | 5869674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2125950 |
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| End bp | 2127638 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641547011 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001668128 |
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| Protein GI | 167032897 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.969395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGACA ACTATCGCGC GGCCGTGGAC GCGGCCGCGA TCTTTTCCGA AACCGACCTG
CGTGGGAACA TCACTTACGT CAACCAGCAG TTCTGCAGCA TCTCGGGCTA CAGCCGTGAG
GAGCTGCTGG GCGCCAACCA CCGCATCCTC AACTCGGGCC TGCACGAGCC GGCGTTCTTC
GTTGGCATGT GGCGTGCCCT GGCTGCCGGG CGGGTATGGA AGGGCGAGAT CTGCAACCGG
GCCAAGGACG GTTCGCTGTA TTGGGTCGAC AGCACCATGG TGCCATTGAT CGACCCGCTG
ACCGGCCAGG TGCGCAAGTA TGTGTCGATC CGCTTTGACG TCACCGAGAA ACGCCAGCTG
CTGCATACCC TGCAGTGGCG GGTGGGCCAC GATGTGCTCA CCGGCCTGCC CAACCGCGCC
TACCTGTCCG ACCTGCTGAA TCAGGCCCTG GCCTACTCGC GCCGCGAAGA CATTCCGCTG
GCGGTGTGCA TGCTCGACCT GGATGGGTTC AAGGCGGTCA ATGACGGCTA TGGGCATGCC
GTGGGCGACT TGCTGCTGGT GGAAGTGGCG CAGCGCTTGA AGAGCATCCT GCGTGGTGGC
GATGCCGTGG CCCGGCTTTC GGGCGACGAA TTCGTGCTGA TCCTGCGCGA TGTCGATGAT
GAGCAGCAGT TGCATGCAGC TCTGCGGCGG GTGTTGCGGG CATTGGCGGC GCCCTGTGTG
GTACGTGAAC ACAGGCTTTC GCTCAGCGCC AGTATCGGCG TGACCCTGTA CCCGCAGGAT
GACGAAGATG CCGACACCTT GGTGCGCCAC GCCGACCAGG CCATGTATGT GGCCAAGCAG
CGCGGGCGCA ACCGCTATCA CCTGTTCGAC GTGTCGCAGG AGCAGGAGCT CAAGGCCACT
CACCAGACTG TAGCGCGCGT GCGCCGGGCA CTGCACAACA GTGAGCTGTG CCTTTACTAC
CAACCCAAGG TCAACCTGCG CAGCGGCCAG GTGCTGGGCT TCGAAGGGTT GTTGCGCTGG
CAACGGCCAG GCCGTGGCGT GGTGCCGCCC GGCGACTTCC TGCCTTGGGT AGAGCAGACC
GACCTGATCG TCGAAATCGG CGAGTGGGTG GTCGGCCAGG CGCTGAGCCA GCTGCAGGCC
TGGCAGCGCC AAGGGCAGCC CTGGTCGTTG AGTGTGAATA TCGCCGCACG GCATTTGCAG
CGCAATGACT TCGCCGAGCG CCTGCAGCAG CTACTGGCAG CGTACCCGGA GGTGGACCCG
GCGCGGCTGG ACCTGGAAAT CGTCGAGTCG GTTGCCATCG ACAACCTGCA GCACGTCAGC
CGCTGCCTGG ACGCCTGCCG TGCACTGGGC GTGCGTTTCT CGCTGGACGA TTTCGGCACC
GGTTATTCGT CGTTGAGTTA CCTGAAACGC TTGCCGACCC AGACGATCAA GATCGACCAG
TCGTTCGTGC GTGACATCCT TCACGACCAG GATGACCTGG CGCTGACGGC GGCGGTGATC
GGCCTGGCCC GGGCGTTTGG CCGCGAGGTG ATTGCCGAGG GGCTGGAGAG TGTCGAGCAC
GGCCGGGTGC TGATGGGCCT GGGCTGTGAG CTGGCGCAGG GTTACTGCAT TGCTCGGCCG
ATGCCGGTCA GTGAGGTGCA AGCCTGGGCA CAGGCCTACC GGCAGCCGGA GCAATGGCGG
GCCACGTGA
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| Protein sequence | MDDNYRAAVD AAAIFSETDL RGNITYVNQQ FCSISGYSRE ELLGANHRIL NSGLHEPAFF
VGMWRALAAG RVWKGEICNR AKDGSLYWVD STMVPLIDPL TGQVRKYVSI RFDVTEKRQL
LHTLQWRVGH DVLTGLPNRA YLSDLLNQAL AYSRREDIPL AVCMLDLDGF KAVNDGYGHA
VGDLLLVEVA QRLKSILRGG DAVARLSGDE FVLILRDVDD EQQLHAALRR VLRALAAPCV
VREHRLSLSA SIGVTLYPQD DEDADTLVRH ADQAMYVAKQ RGRNRYHLFD VSQEQELKAT
HQTVARVRRA LHNSELCLYY QPKVNLRSGQ VLGFEGLLRW QRPGRGVVPP GDFLPWVEQT
DLIVEIGEWV VGQALSQLQA WQRQGQPWSL SVNIAARHLQ RNDFAERLQQ LLAAYPEVDP
ARLDLEIVES VAIDNLQHVS RCLDACRALG VRFSLDDFGT GYSSLSYLKR LPTQTIKIDQ
SFVRDILHDQ DDLALTAAVI GLARAFGREV IAEGLESVEH GRVLMGLGCE LAQGYCIARP
MPVSEVQAWA QAYRQPEQWR AT
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