Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1864 |
Symbol | |
ID | 5869649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2098084 |
End bp | 2099892 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641546986 |
Product | ABC transporter |
Protein accession | YP_001668103 |
Protein GI | 167032872 |
COG category | [R] General function prediction only |
COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.653168 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAAATGA ACTGGCACCA GGCCCTGCAA GAGAGCCTGA GCTGGCTGGC GATCGCCTCG TTCATCACCC TTGTCTGCTT CACTGCAGCC GCAGCACTGG CTGTGCGTTG CACGCGCTGG GGTAGCCAGT TCTGGCAGCT CGCCGGGCCC TATTTCAGTT TCAGGCGCAG TTGGCGACCG TTGCTGGTGT TTGCCCTTCT GCTGGTACTG ACGCTGTTCT CGGTTCGGCT CAATGTGCTG TTTTCATTCT GGTACAACGG CTTCTACAGC GCCCTGCAGG GCCTCGACCA AGCCGCTTTC TGGTACCTGC TCGGGGTCTT CGCGGTACTG GCCACCATCC ACGTGCTGCG CTCGTTGTTT ACCTTCTATG TAAGCCAGGC ATTCAGCATC AAGTGGCGGG TCTGGTTGAC CGAGCGCCTG ACCCACGACT GGATGCAGGG CGATGCCTAC TACCGTGGCC AGTTCCTCGC CGAGCTGGTG GACAACCCCG ACCAGCGTAT CGAACTGGAC GTCAATGCCT TCGTCACCAA CTCGGTCACC CTTGCCCTGG GTGCGGTCAG TGCGCTGGTT TCACTGGTGG CGTTCACCGG TATCCTCTGG GGGCTCTCAG CACCGTTGAC AGTGGCCGGG GTGGAGATAC CTCGGGCGAT GGTGTTTGCC GTGTACCTGT ATGTCATCGT CGCCACCTGG GTCGCCTTCC GCCTCGGGCG CCCGCTGATC CGCCTGAACT TCCTCAACGA AAAACTCACC GCCAACTTCC GTTACGCGTT GATGCGCCTG CGTGAGAACG CAGAGAACAT TGCCTTCTAT CAAGGTGCGC AAGTGGAGCG GGGCACGTTG CTGGGCCGTT TTGCTGCCTT GATCGTCAAT GCCTGGGCAT TGGTGTTCCG GAACCTGAAG TTCAGTGGCT TCAACCTGGG GGTCAGCCAG GTTGCCGTGG TGTTCCCGTT CATTCTCCAG GCGCCGCGCT TCTTCAGTGG TGCGATCAAG CTGGGCGATG TCATGCAAAC GTCCCAGGCC TTTGGCCAGG TGCAGGACTC TTTGTCGTTC TTCCGAGAGT CGTACGATGC GTTTGCCCAG TATCGCGCTA CCCTCGACCG TCTGACTGGT TTTCTCGATG CTAACGAGCA GGCAAGTGGG TTGCCGCGAG TGACTACCGA AGACCAGGCG CATGCGCTGC AGATCATGGG GCTGCAGGTA CTACGCCCGG ACGGACACGC CCTTATCGCC GACCTGGACT TGAGCTTGCA TGCCGGTCAG GCGCTGTTGA TCAAAGGGCC ATCGGGCAGT GGCAAGACCA CGCTGCTGCG CGCCCTGGCA GGGTTGTGGC CGTATGCCGA AGGTGAAGTC AGGCGGCCGA CGGGTCACCA GGCGTTGTTC CTGTCGCAGC GCCCGTACCT GCCGCTAGGT GATTTGCGTA CCGTCATTGC CTACCCGGCA GCCGGCAAGC CCGAGGATGA GGCGCGAATG CAGCAGGCGT TGCGCCAGGT CAACCTGGCC CACCTGGCCG AACGCCTGGA CGTCAGCAGC GACTGGTCAC ACATCCTCTC GGTGGGTGAG CAGCAGCGCC TGGCGTTCGC CAGGGTGCTG TTCAACCGGC CGCAGGTGGT GTTCCTCGAC GAGTCCACCT CAGCGATGGA TGAGGGGCTC GAGCATGCCC TGTATGCGCT GCTGCGCTCA GAAATGCCGG GTGCATTGCT GGTCAGTGTC GGCCACCGCA GCACGCTGGC AGGGTTCCAT ACCCACCGGC TGGAGGTGAA CGGGCAGGGC GGCTGGACGT TGCTGGAGCA GCAGGCAGCG ATGGCCTAG
|
Protein sequence | MEMNWHQALQ ESLSWLAIAS FITLVCFTAA AALAVRCTRW GSQFWQLAGP YFSFRRSWRP LLVFALLLVL TLFSVRLNVL FSFWYNGFYS ALQGLDQAAF WYLLGVFAVL ATIHVLRSLF TFYVSQAFSI KWRVWLTERL THDWMQGDAY YRGQFLAELV DNPDQRIELD VNAFVTNSVT LALGAVSALV SLVAFTGILW GLSAPLTVAG VEIPRAMVFA VYLYVIVATW VAFRLGRPLI RLNFLNEKLT ANFRYALMRL RENAENIAFY QGAQVERGTL LGRFAALIVN AWALVFRNLK FSGFNLGVSQ VAVVFPFILQ APRFFSGAIK LGDVMQTSQA FGQVQDSLSF FRESYDAFAQ YRATLDRLTG FLDANEQASG LPRVTTEDQA HALQIMGLQV LRPDGHALIA DLDLSLHAGQ ALLIKGPSGS GKTTLLRALA GLWPYAEGEV RRPTGHQALF LSQRPYLPLG DLRTVIAYPA AGKPEDEARM QQALRQVNLA HLAERLDVSS DWSHILSVGE QQRLAFARVL FNRPQVVFLD ESTSAMDEGL EHALYALLRS EMPGALLVSV GHRSTLAGFH THRLEVNGQG GWTLLEQQAA MA
|
| |