| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1817 |
|---|
| Symbol | |
|---|
| ID | 5869597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2038039 |
|---|
| End bp | 2040465 |
|---|
| Gene Length | 2427 bp |
|---|
| Protein Length | 808 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641546934 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001668056 |
|---|
| Protein GI | 167032825 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.673878 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGC CCTTGCACCG CCGTCGCGGT TCTCTTCACC ACGCCCTGAT GTCCTGCAGT
GCCCTGGCCA TGCTGGTCGG TCCGCTGCAT GTGTGGGCCG CGACGACCAC CGAACAGACC
CAGATGCAGG CTCGCCAGGT TCAGCTCGAC GTGCCAGCCC AACCGTTGGG CCAGGCCCTG
ACCACTTTCG CCGACCAGGC TGGCCTGCAC CTGTTGTTCA CCACGGGTGA TGTCGCAGAT
CAGGCCAGCC CGGCGTTGCA GGGCAGCTAC AGTGTCGAGC AGGCCCTGCA GCAGCTGCTG
GCCGGCAGCG GCATGAGCTG GCAGTTCAGC GATGCCCGTA CGGTCACCCT GCGTAAAACC
GAGGCCGCGC CGCAGGCGGT CAACCTCAAG CCGATCGAAG TCAGCGTGGC CTCGCGCACC
AGCACCGCAA TCAGCGAAAT CCCCGGCACC GTCTGGGTGG TCGAGCAGCA GCAGTTGCGC
GAGCAGATCG ACAGCGGTGT CAGCCTGAAG GAAGCCATCG GCAAGCTGGT GCCGGGCCTC
GACCTGGCGC CGGAAGGGCG CACCAACTAC GGCCAGAACA TGCGCGGGCG CAACGTGCTG
GTGATGATCG ACGGGGTCAG CCAGAACAGC TCGCGCGGCC TGTCGCGCCA GTTCGACAGC
ATTTCGCCGT TCAACGTCGA GCGCGTCGAA GTGTTGTCGG GTGCCAGCGC CATCTACGGC
GGTGGCGCCA CCGGCGGCAT CATCAACATC GTGACCAAGA AGGGCGAGCC CGGCCCGGCG
CGGTTCGAGA CCCAGCTGGG CGCCAGCAGC GGCTTCAACA ACAGCGACGA CCTGGCCACT
CGCTTCGCCC AGTCGATCAG CGGCGGCAAC GAGCGGGTCA ATGCCCGGCT GGGTATCTCC
GGTGAGCAGA ACGAAGCCTT TTACGATGGT GCAGGCGACC AGATCTTCAT CGACAACACC
CAGACCGACC TGCAGTACAA CCGCACCATC GATGTGCTCG GTACCTTGGG CCTGCAGTTG
AACGACCAGC AGAGCCTCGA CCTGTTGGCC CAGTACTACG ACTCGGGCAA CCACGGCAGC
ACGGGTATCT ACTTCCCCAA CCTCAACTAC AACGCGCCGT CAGACCTGGA AGACGCCGAG
CTGCGCAGCG GTTATTCGTC GGACCTGGAG CCGCGTACCC GACGCTTGTT GCTGAACGCC
AATTACCACC ACAACGACGT GCTGGGCCAG GATTTCTACC TGCAAGCCTC GTACCGCAAG
GAAGACGACA ACTTCTACCC GTTCCCGTAC TACAACCGTG CCACGCCCAC CGGTTCGCGC
GGGGTGTACT TTGCTGCCTC GCAGCAGAAC TTCGAGGTCA CCAGCCTCAA GGGGCTGTTC
GCCAAGCAAT GGGCCACGCT GAAGCTGACC TACGGCGTCG ACCTGGACCG CGAGCGGTTC
AACGCCGAGC AGACCACCTT CAATGCCCTG ACTTCGTCCG AGTCGGGCGG CCTGGAGATG
GAAAAGGACA GCAAGGCGGC GCGTTACCCC AGCTATCGGG TCGATGGTGT GTCGGTGTAT
GCCCAGCTGG ACTGGCACGC CACCGACAAC CTGACGTTCT CGGGCGGCGC TCGTCGCCAG
CAGATGGACG TGGATGTCAG CGACTTCAAG GGCGTACCGG GCGGCAGCAA CGACTACCAG
GTGAACCTGT TCAACGTCGG TGCCATCTAC GATTTCAAGA ACGGCCACCA GGTGTGGACC
AACTACGGCG AAGGCTTCGA CCTGCCGGAC CCAGCCAAGT ACTACGGCAA GCCGGGCCTG
AGCGTGGCCG ACAACCCGCT GGCTGGCATC AAGAGCCGCC AGGTGGAGCT GGGCTGGCGC
TATGCCGACC TGGACTGGGA TGCCCAGGCA GCGCTGTACT ACATCTGGTC GGACAAGATC
ATCAACGTCG ATTCGCAAAC GCTGACCATC AACGTGGAAG AGCAGAAGAG CCGCGACTTT
GGCTTTGAAG GTGCGCTGAC CCGGCACTTC CAGGCCGGTT GGGAAACCGG CGGCACCTTG
CACCTGACCC GCTCCGAAGA AGAGGCTGCA GACGGTGGCT GGATCAAGCG TGATGCCCGC
TATGCTTCGC TGTCCAAGGC CACCGCGTTC GTCGGCTGGA AGGGCGATGG CCGCAGCGCG
CGGTTGCAGG CCAACCATGC TCTCAGCCTG AAGGACGATG CCGACCATGA GATCGACGGC
TACACCACCT TCGACTTGCT TGGCAGCCAG GACACCGGTT TCGGTACCTT CAGTGCCGGC
ATCCAGAACC TGCTGGACAA GCAGTACAGC ACGGTCTGGG GGCAGCGTGC GACGCTGTTC
TATTCACCGA CCTACGGGCC AGCGTACCTG TATGACTACC AAGGGCGTGG GCGCACCTAC
ACGCTGACCT GGAGCATGGC TTACTGA
|
|---|
| Protein sequence | MLKPLHRRRG SLHHALMSCS ALAMLVGPLH VWAATTTEQT QMQARQVQLD VPAQPLGQAL
TTFADQAGLH LLFTTGDVAD QASPALQGSY SVEQALQQLL AGSGMSWQFS DARTVTLRKT
EAAPQAVNLK PIEVSVASRT STAISEIPGT VWVVEQQQLR EQIDSGVSLK EAIGKLVPGL
DLAPEGRTNY GQNMRGRNVL VMIDGVSQNS SRGLSRQFDS ISPFNVERVE VLSGASAIYG
GGATGGIINI VTKKGEPGPA RFETQLGASS GFNNSDDLAT RFAQSISGGN ERVNARLGIS
GEQNEAFYDG AGDQIFIDNT QTDLQYNRTI DVLGTLGLQL NDQQSLDLLA QYYDSGNHGS
TGIYFPNLNY NAPSDLEDAE LRSGYSSDLE PRTRRLLLNA NYHHNDVLGQ DFYLQASYRK
EDDNFYPFPY YNRATPTGSR GVYFAASQQN FEVTSLKGLF AKQWATLKLT YGVDLDRERF
NAEQTTFNAL TSSESGGLEM EKDSKAARYP SYRVDGVSVY AQLDWHATDN LTFSGGARRQ
QMDVDVSDFK GVPGGSNDYQ VNLFNVGAIY DFKNGHQVWT NYGEGFDLPD PAKYYGKPGL
SVADNPLAGI KSRQVELGWR YADLDWDAQA ALYYIWSDKI INVDSQTLTI NVEEQKSRDF
GFEGALTRHF QAGWETGGTL HLTRSEEEAA DGGWIKRDAR YASLSKATAF VGWKGDGRSA
RLQANHALSL KDDADHEIDG YTTFDLLGSQ DTGFGTFSAG IQNLLDKQYS TVWGQRATLF
YSPTYGPAYL YDYQGRGRTY TLTWSMAY
|
|---|
| |