Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1771 |
Symbol | |
ID | 5869551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1988655 |
End bp | 1989893 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641546888 |
Product | major facilitator transporter |
Protein accession | YP_001668010 |
Protein GI | 167032779 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00895] benzoate transport |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.156898 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGGCTT CGTCCGACAT GGTTCAAAAA AAGGATGCGT CACCGCGCAA GGCTTTGATA GCCAGTGTGA CGGGTTATGC AATGGACGGC TTCGACTTAC TGATTCTCGG GTTTATGCTG CCTGCGATTA CGATCGGCCT TGCGCTGACA TCATCGGAGG CCGGCTCGCT GGTGACTTGG ACGTTATTGG GAGCTGTGGC AGGCGGGCTG ATATTTGGCC AATTGAGCGA TCGCTATGGC CGGGTTCGAA TGCTGACCCT GTGCATCCTG ACCTTCTCCA TCTTCACTGG TCTCTGCGCA ATCGCTCAGG GCTATTGGGA TCTGTTGATC TACAGGACCC TCGCCGGTTT CGGTTTGGGT GGTGAGTTCG GTATCGGCAT GGCGCTGATC GCCGAGACCT GGCCGGCACA CCGGCGCAAC CGAGCCTCCT CTTATGTGGG CATGGGATGG CAAGCCGGTG TTCTTGCGGC GGCTCTTCTC ACACCATTGC TTCTGCCTTA CATCGGCTGG CGTGGCATGT TCCTGGTCGG CTTGCTGCCT GCTTTCGTTT CTTTGATTGT CCGTCACACG ATGAGTGAGC CGGCTGAGTT CGTGAAGGCT GCAGCTGATC CTGTTCCGTT TGCTCGGCGA TTCACTGACC TTTTCAAAGA CCGGCAGACC ACCAAGGCCA GTGTTGGGGT GATGGTCCTG ACTTCTGTGC AGAACTTTGG GTACTACGGC CTGATGATCT GGATGCCCAG CTACTTGTCC AAGAAATTCG GCTTTTCGCT CATGGCATCT GGTACTTGGA CTGCAGTCAC TGTGCTGGGC ATGGCATTCG GGATTTGGCT GTTCGGCCAA CTGGCGGATC GCTTTGGCCG CAAGAAGATG TTCCTGCTCT ACCAAGCAGG CGCAGCGATC ATGGTCATTG CTTATGCCAA CCTTGATAAC CCGACCGTCA TGCTGTTCGC CGGCGCGATC ATGGGGATTT TTGTGAACGG TATGATCGGC GGTTATGGGG CGTTGATCTC TGATCTCTAC CCGGCGCAGA TACGCGCCAC GGCCCAGAAC GTGCTGTTCA ACATTGGCCG TGCTGCGGGC GGGTTCGGTC CATTAGTTGT GGGGGCGGTA GCACTTCATT ACTCCTTCAC TGCCGCGATC ATGTTGCTCT CGTCGCTTTA CGTCGTGGCG ATGGCCGCTA CGGTCTTTCT GCTTCCTGCC TGTCAGAGTG AACAGCTGAA AAAGGCTCAG CCGGCTTAA
|
Protein sequence | MMASSDMVQK KDASPRKALI ASVTGYAMDG FDLLILGFML PAITIGLALT SSEAGSLVTW TLLGAVAGGL IFGQLSDRYG RVRMLTLCIL TFSIFTGLCA IAQGYWDLLI YRTLAGFGLG GEFGIGMALI AETWPAHRRN RASSYVGMGW QAGVLAAALL TPLLLPYIGW RGMFLVGLLP AFVSLIVRHT MSEPAEFVKA AADPVPFARR FTDLFKDRQT TKASVGVMVL TSVQNFGYYG LMIWMPSYLS KKFGFSLMAS GTWTAVTVLG MAFGIWLFGQ LADRFGRKKM FLLYQAGAAI MVIAYANLDN PTVMLFAGAI MGIFVNGMIG GYGALISDLY PAQIRATAQN VLFNIGRAAG GFGPLVVGAV ALHYSFTAAI MLLSSLYVVA MAATVFLLPA CQSEQLKKAQ PA
|
| |