| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1721 |
|---|
| Symbol | |
|---|
| ID | 5869501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1944892 |
|---|
| End bp | 1945503 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641546838 |
|---|
| Product | exonuclease RNase T and DNA polymerase III |
|---|
| Protein accession | YP_001667960 |
|---|
| Protein GI | 167032729 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.431588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0000758333 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAT TGATCTGCGT CTTCGACACC GAAACCACCG GCTTCCCGAA CTTCAAAGCC
CCCAGCGACC ACCCAGACCA ACCCCACATC GTCGATATCT GCGCCCTGCT CTACACCCCC
GAGGGCGAGC TGGTCGACAG CTTCGAAGCA ATGGTCCGCC CCGATGGCTG GAGCATCCCC
AACGAAGTCG CCGTGATCCA CGGCATCACC AACGAACTCG CCCTGGAGCA CGGCATTCCT
GAGGCCCTGG CCATCGAAGG CTTCTTGAAC ATCTGGAACC AGGCCGGCCT GCGCGTGGCG
CACAACGTGT CGTTCGACGA CCGCATCATG CGCATCGCCC TCAAGCGCTT CCAGGATGCC
TGGGTGGCCG AAACCTTCCG CGATTCGCCC AAGTTCTGCA CCTGCCAGTC CACCACCAGC
ATCGTGAAGT GCCCGCCCAC CGAGAAGATG ATCGCCGCCG GCCGCGGCAA GCAGCACAAG
CCGCCAACCG TGACCGAAGC GTTGAAGTTC TTCACCGGCG AAGACCTGGT CGGCGGTCAC
CGCGCCCGTC CCGACGCCGA GGCCTGCGCC CGCGTGTACT TCGCCCTTCA AGCCTTCCAG
TCGGTCGCCT AA
|
|---|
| Protein sequence | MSELICVFDT ETTGFPNFKA PSDHPDQPHI VDICALLYTP EGELVDSFEA MVRPDGWSIP
NEVAVIHGIT NELALEHGIP EALAIEGFLN IWNQAGLRVA HNVSFDDRIM RIALKRFQDA
WVAETFRDSP KFCTCQSTTS IVKCPPTEKM IAAGRGKQHK PPTVTEALKF FTGEDLVGGH
RARPDAEACA RVYFALQAFQ SVA
|
|---|
| |