Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1709 |
Symbol | |
ID | 5869489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1934889 |
End bp | 1935815 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641546826 |
Product | transaldolase B |
Protein accession | YP_001667948 |
Protein GI | 167032717 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0176] Transaldolase |
TIGRFAM ID | [TIGR00874] transaldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.137258 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0000213936 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCTCCA AGCTGGAACA ACTCAAGCAG TTCACCACCG TGGTCGCCGA CACCGGGGAC CTGGACGCCA TCACCCGCCT GAAGCCGGTC GATGCCACCA CCAACCCGTC TTTGCTGCTC AAGGCCGCTG CCATCCCGGG CTATGCCGAT CTGCTCAAGC AAGTGAAGGC CGACGCCAAG GGTGATGTCG ACCTGGCCTG CGACAAGTTT GCCGTGGCCG TGGGCTCGGG CATTCTCAAG GTCATCCCAG GGCGTATCTC CACCGAGGTT GATGCACGCC TGTCGTTCGA TGAGCCGGCC CTGCTGAACA AGGCACGCCA GTTGATCGCC CTTTACGAAG CGGCCGGTGT GCCAAAAGAC CGAGTGCTGA TCAAGCTGGC CTCCACCTGG GAAGGCATTC GCGCCGCCGA GAAGCTGGAG AAGGAAGGCA TCCAGACCAA CCTCACCCTG CTGTTCTCCT TCGCCCAGGC CCAGGCCTGC GCCGATGCCG GGGTGTTTCT GATTTCGCCG TTCGTGGGCC GTATCTACGA CTGGTACAAA AAAAGCACCG GCAAGGACTA CGTCGGCGCC GAGGACCCGG GCGTGCAGTC GGTCACGCGT ATCTACAACT ACTACAAGGC CAATGGCTAC AACACCGTGG TCATGGGCGC CAGCTTCCGT AATATCGGCC AAATCGAGCA ACTGGCCGGC TGCGACCGCC TGACCATCAG CCCGGAACTG CTGCAACAGC TTAGCGATGA CCAGGGCGAA CTACCGCAGG TACTGAAGCC AGGCAATGCC GGTGAAGCCA AGCAGCCGTT GAACGAAAGC CAATTCCGCT GGGCGATGAA TGAAGATGCC ATGGGCACCG AGAAGCTGGC CGAGGGTATT CGCCAGTTTG CGCGGGACCA GGAGAAGCTG GAGAAGTTGA TGGCTGAAAA GGCCTGA
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Protein sequence | MTSKLEQLKQ FTTVVADTGD LDAITRLKPV DATTNPSLLL KAAAIPGYAD LLKQVKADAK GDVDLACDKF AVAVGSGILK VIPGRISTEV DARLSFDEPA LLNKARQLIA LYEAAGVPKD RVLIKLASTW EGIRAAEKLE KEGIQTNLTL LFSFAQAQAC ADAGVFLISP FVGRIYDWYK KSTGKDYVGA EDPGVQSVTR IYNYYKANGY NTVVMGASFR NIGQIEQLAG CDRLTISPEL LQQLSDDQGE LPQVLKPGNA GEAKQPLNES QFRWAMNEDA MGTEKLAEGI RQFARDQEKL EKLMAEKA
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