| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1697 |
|---|
| Symbol | |
|---|
| ID | 5869477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1923784 |
|---|
| End bp | 1925025 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641546814 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001667936 |
|---|
| Protein GI | 167032705 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00934342 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGAC CCTTGCCCAT TTTTATCGGC GCGCGCTACA CCCGAGCCAA GCGTCGCAAC
CACTTCATCT CGTTCATCTC GATGACGTCG ATGATCGGCC TGTCGCTGGG CGTGCTGGCG
ATGATTGTGG TGCTGTCGGT GATGAACGGC TTTCAGCGCG AAATGAGCTC GCGCATTCTC
GGGTTGGTGC CGCATGCCGC CATCCTTGGC GTGCAGCCAT TGGACGATTG GCACAAGGTG
GCCGACGCTG CCATGCAGAA CCCGGCGGTG ATGGCGGTGG CGCCGATTAC CGAGATGGAA
GGCATGCTGT CGTACAAAGG TGCGATGCAG CCGATTCAGG TGGGTGGTAT CGACCCGGCC
GAGGAGGGCA AGGTCTCGAT CGTTGGCCAG CACATCGTGC AGGGCCGCTT GCAAGACCTG
CAGCCAGGTG AGTTCGGTGT GGTCATCGGC GAGCTGACGG CGCGGCGTTT TCGTCTGAAC
ACTGGCGACA AACTGACCTT GATCGTGCCG GAAATCAGCA AGGAGCCGGG TGGCATTACC
CCGCGCATGC AGCGCCTGAA CGTGGTCGGG ATCTTCAAGG TGGGCGCCGA GCTGGATGGC
TCGCAAGCCT ATATCCATGT GGCTGATGCT GCCGAGATGC AACGCTGGGC GCCGGGCCAG
GTGCAGGGCG TGCGCCTGAA GCTGCATGAC CTGTATGCCG CGCCGCAGGT GTCCAAGGCA
ATTGCTGCAG GGCTCGGCGA CGCCTACCGC GCCGATGACT GGTCGCACAC CCAGGGCAGC
CTGTTCAGCG CCATGAAAAT GGAGAAGACC ATGATCGGCC TGCTGCTGAT GATGATCATC
GCGGTGGCGG CGTTCAATAT CATCGCCACC CTGGTGATGG TGGTGAACGA CAAGGGGCCG
GACATTGCCA TCCTGCGTAC CTTGGGCGCC ACGCCAGCGC AGATCATGGG CACGTTCATG
GTTCAGGGCA GCCTGATTGG TGTTGTCGGG ACGCTGATCG GCGGCGTGCT GGGCGTGATT
GCGGCGTTCA ATGTCAGTCA AATCGTTGGT TGGCTGGAGC GGGTGAGCGG GCAGCACATC
TTTACCTCGG ATGTGTACTT CGTCAGCAGC TTGCCGTCGC AATTGCAATG GGGTGATGTG
GCCATGATTT GCACGGCTGG CCTGGTGATG AGCTTCCTGG CGACCATTTA CCCGGCTTAC
CGGGCGTCGC AGGTGCAGCC GGCGATCGGT CTGGCGGTTT GA
|
|---|
| Protein sequence | MFRPLPIFIG ARYTRAKRRN HFISFISMTS MIGLSLGVLA MIVVLSVMNG FQREMSSRIL
GLVPHAAILG VQPLDDWHKV ADAAMQNPAV MAVAPITEME GMLSYKGAMQ PIQVGGIDPA
EEGKVSIVGQ HIVQGRLQDL QPGEFGVVIG ELTARRFRLN TGDKLTLIVP EISKEPGGIT
PRMQRLNVVG IFKVGAELDG SQAYIHVADA AEMQRWAPGQ VQGVRLKLHD LYAAPQVSKA
IAAGLGDAYR ADDWSHTQGS LFSAMKMEKT MIGLLLMMII AVAAFNIIAT LVMVVNDKGP
DIAILRTLGA TPAQIMGTFM VQGSLIGVVG TLIGGVLGVI AAFNVSQIVG WLERVSGQHI
FTSDVYFVSS LPSQLQWGDV AMICTAGLVM SFLATIYPAY RASQVQPAIG LAV
|
|---|
| |