Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1684 |
Symbol | |
ID | 5869464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1906211 |
End bp | 1906918 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641546801 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001667923 |
Protein GI | 167032692 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.46279 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.0995016 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCAAT CGGAAACCGT TGAACGCATT CTCGATGCTG CCGAGCAGCT GTTCGCGGAA AGGGGGTTCG CCGAAACCTC GTTGCGGCTG ATTACCAGCA AGGCCGGGGT CAACCTGGCG GCCGTCAACT ATCACTTCGG CTCCAAGAAG GCACTGATTC AGGCGGTGTT CTCGCGCTTC CTCGGCCCGT TCTGCACCAG CCTCGAGCGT GAGCTGGAGC GGCGCCAGGC CAAGCCGGAG CACAAGCCGA CCCTCGAAGA ACTGCTGGAA ATGCTGGTAG AGCAGGCGTT GGCCGTGCAG CCGCGCAGCA ACAACGACCT GTCGATCTTC ATGCGCCTGC TGGGCCTGGC GTTCAGCCAG AGTCAGGGCC ACCTGCGGCG TTATCTGGAA GACATGTACG GCAAGGTGTT CCGCCGCTAC ATGCTGCTGG TCAACGAGGC TGCGCCACGC ATTCCGCCAC TGGAGCTGTT CTGGCGCGTC CACTTCATGC TTGGTGCTGC GGCCTTCAGC ATGTCCGGTA TCAAGGCCCT GCGGGCGATT GCCGAGACCG ACTTTGGTAT CAACACCTCG ATCGAGCAGG TGATGCGCCT GATGGTGCCG TTCCTGGCCG CAGGCATGCG CGCCGACAGC GGTGTCACCG ACGATGCCAT GGCCACTGCG CAGTTGCGCC CGCGCACCAA GATCAGTAGC GCCACAGCCA AGGCCTGA
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Protein sequence | MAQSETVERI LDAAEQLFAE RGFAETSLRL ITSKAGVNLA AVNYHFGSKK ALIQAVFSRF LGPFCTSLER ELERRQAKPE HKPTLEELLE MLVEQALAVQ PRSNNDLSIF MRLLGLAFSQ SQGHLRRYLE DMYGKVFRRY MLLVNEAAPR IPPLELFWRV HFMLGAAAFS MSGIKALRAI AETDFGINTS IEQVMRLMVP FLAAGMRADS GVTDDAMATA QLRPRTKISS ATAKA
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