Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1672 |
Symbol | |
ID | 5869452 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1891903 |
End bp | 1893828 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641546789 |
Product | lytic transglycosylase catalytic |
Protein accession | YP_001667911 |
Protein GI | 167032680 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.08863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.827941 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAGCC GCCTGTTACA TATTGCATCC TGCCTGCTGC TTACCGCCGC CACCTGCGCG GCGCAGGCCA CCGACCTGAC CCTGCAACGC CAGTATTATG ACGAGGCCAA GCGTGCGCTG GCCAAAGGCG ACAAAGGCCC CTACCTGCGC TATGCCCAGG CCCTGAGCGA CTACCCGCTG ACGCCCTACC TGGCCTACGA CGAGCTCACC GCCCGCCTGA AAAGCGCCAG CAACCAGGAG ATCGAAGGTT TTCTCGCCAA GCATGGCGAC CTGCCCCAGG CCAACTGGAT GAAGCTGCGT TGGTTGCGCT GGCTGGCCGA GCGCGGCGAG TGGGACACCT TCGTCAAGTA CTACGACCCC AAGCTCAACT TCACCGAACT GGACTGCCTC AACGGCCAGT ACCAGCTCAG CCACGGCCTG CGCGCCGAAG GCTACGCCAC CGCCGATAAG CTGTGGAACG TCGGCAAGTC GCAACCCGCT GCCTGCGACA CACTGTTCGG CATGTGGGCA GCCGAAGGCC AGCTGACCGA GGCCAAGCGC TGGGAACGCA CCAAACTGGC GGCCCAGGCA CGCAACTATG GCCTGGCTAA CAACCTGGTC AAAACCCTGA CTACCCTCGG CCCGCAGGGG AGCCTGCTGG TCGACGTGGC GCAGAAGCCC GAGCTGCTCA ACCAGCCGTC ACGCTTCACC CCGGTCAACG AAGCGATGTC CGACGTGGTC AGCCTCGGCC TTCGTCGCCT GGCCCGGCAG GACCCGGAGC GAGCCATGGC GCTACTCGAC GACTACGCCC AGCGCATGCA CTTCTCCCGC GACGAAAAGG TGGCCATCGC CCGCGAAATC GGCCTGACCC TGGCGCGTCG TTACGACCCG CGCGCGCTCG ACCTCATGAC CCGCTACGAC CCCGAGCTGC GCGACAACAC CGTCAGCGAA TGGCGCCTGC GCCTGCTGCT GCGCCTGGGC CGCTGGGAAG ACGCCTACGA GTTGACCAAA CGCCTGCCCC AGGACCTGGC CAGCAGCAGC CGCTGGAAGT ACTGGCAGGC TCGCAGCCTG GAGCTGGCAC AGCCAAACAA CCCGCAGATT CCACTGCTGT ACAAGACCGT GGCGCGTGAA CGCGACTTCT ATGGTTTCCT GGCCGCCGAC CGGGCACAGA CGCCTTACCA ACTGAACAAC AAGCCGCTGC CGCTGAGCCC GCAACTGGTC AAAAAGGTGC GCAATACGCC CGGCATTCAA CGCGCACTGG AATTCCACGC CCGTGGCCAG ATCGTCGAAG GCCGCCGCGA GTGGTACCAC GTCAGCCGTC ACTTCACCCG CGACGAAATG GTTGCCCAGG CACGCCTGGG CTATGAGCTG CGCTGGTATT TCCCGGCTAT CCGTACCATC AGTCAGGCGC AGTACTGGGA CGACCTGGAC ATCCGCTTCC CGATGGCCCA CCGCGACACC CTGGTACGCG AGGCCAAAGT TCGCGGCCTG CATTCGAGCT GGGTATTCGC CATCACCCGC CAGGAAAGCG CCTTCATGGA AGACGCACGC TCACCGGTGG GCGCCAGCGG CCTGATGCAA CTGATGCCGG CCACCGCCAA AGAGACCGCG CGCAAGTTCA GCATCCCGCT GGCATCACCC GCGCAAGTGC TGAACCCAGA CAAGAACATC CAGCTGGGTG CGGCCTACCT GAGCCAGGTC CACAGCCAAT TCAACGGCAA TCGAGTGCTG GCTTCGGCGG CCTACAACGC CGGCCCCGGG CGCGTGCGTC AGTGGCTCAA AGGCGCCAAG CACCTGAGTT TCGATGTATG GGTGGAGTCG ATCCCGTTCG ACGAAACACG CCAGTATGTG CAGAACGTGC TGTCGTATTC GGTGATCTAC GGGCAGAAGC TGAATTCGCC ACAGCCGCTA GTGGATTGGC ATGAGCGGTA TTTCGACGAC ATGTAA
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Protein sequence | MRSRLLHIAS CLLLTAATCA AQATDLTLQR QYYDEAKRAL AKGDKGPYLR YAQALSDYPL TPYLAYDELT ARLKSASNQE IEGFLAKHGD LPQANWMKLR WLRWLAERGE WDTFVKYYDP KLNFTELDCL NGQYQLSHGL RAEGYATADK LWNVGKSQPA ACDTLFGMWA AEGQLTEAKR WERTKLAAQA RNYGLANNLV KTLTTLGPQG SLLVDVAQKP ELLNQPSRFT PVNEAMSDVV SLGLRRLARQ DPERAMALLD DYAQRMHFSR DEKVAIAREI GLTLARRYDP RALDLMTRYD PELRDNTVSE WRLRLLLRLG RWEDAYELTK RLPQDLASSS RWKYWQARSL ELAQPNNPQI PLLYKTVARE RDFYGFLAAD RAQTPYQLNN KPLPLSPQLV KKVRNTPGIQ RALEFHARGQ IVEGRREWYH VSRHFTRDEM VAQARLGYEL RWYFPAIRTI SQAQYWDDLD IRFPMAHRDT LVREAKVRGL HSSWVFAITR QESAFMEDAR SPVGASGLMQ LMPATAKETA RKFSIPLASP AQVLNPDKNI QLGAAYLSQV HSQFNGNRVL ASAAYNAGPG RVRQWLKGAK HLSFDVWVES IPFDETRQYV QNVLSYSVIY GQKLNSPQPL VDWHERYFDD M
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