| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1659 |
|---|
| Symbol | |
|---|
| ID | 5869438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1877192 |
|---|
| End bp | 1878994 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641546775 |
|---|
| Product | lipid ABC transporter ATPase/inner membrane protein |
|---|
| Protein accession | YP_001667898 |
|---|
| Protein GI | 167032667 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.184934 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGTCT GCGGTTTCCC CAGCATTGTG GTCGTCGCCA TGCCCGAATC GGTTTCCCCA
CGTCAACGCC GTGCCTTGCG CCTGGCCTGG CAGTTCGTTC GCCCCTATCG TCGGCAAGTG
CTGCTGGCCT TGCTGGCCTT GGTGGTTACC GCCGCCATTA CGTTGTCCAT GGGCCAGGGT
ATCCGCTTGC TGGTGGACCA GGGCTTCATG ACGCGCTCCG CGCACCAGCT CAACCAGACC
ATCGGGCTAT TCCTGGTGCT GGTGCTGGCC CTGGCAGTGG GCACCTTCAG CCGTTTCTAC
CTGGTGTCGT GGATTGGTGA GCGCTGCGTG GCCGATATCC GTCGTGCCGT GTTCGACCAC
CTGATCGGTC TGCACCCAGG TTTTTTCGAA GACAACCGCA GCTCCGAGAT CCAGTCACGG
CTGACAGCGG ACACCACCCT GCTGCAATCG GTCATCGGTT CATCGCTGTC GATGTTCCTG
CGCAACGCGC TGATGGTCAT TGGCGGCGTG GTGTTGCTGT TCATCACCAA CCCCAAGCTC
ACCAGCATCG TGGTGGTGGC CCTGCCGCTG GTGCTGGCAC CGATTCTGCT GTTCGGCCGT
CGGGTGCGCA GCCTGTCACG GCAAAGCCAG GACCGGGTCG CCGATGTAGG CAGCTACGTG
GCCGAGACGC TTGGGCAGAT CAAGACCGTG CAGGCCTACA ACCACCAGGC GCACGACCGC
GAACTGTTCG CCGGCACAGT CGAAGCGGCG TTTACTGTGG CCCGCAAGCG AATTGCTCAG
CGTGCCTGGC TGATCACCTT GGTGATCGTG CTGGTGCTGG GGGCGGTGGG TGTGATGCTG
TGGGTCGGGG GCATGGATGT GATCGCCGGG CGTATTTCCG CAGGCGAACT GGCTGCATTC
GTGTTCTACA GCCTGATCGT CGGCAGCGCT TTCGGTACGC TCAGCGAAGT GATTGGCGAG
CTGCAGCGCG CCGCAGGTGC GGCCGAGCGC ATTGCCGAAC TGTTGGCGGC GCACAGTGCG
ATCCTGCCGC CCGCCGTGGT ACAGGCGCAA CCACAGCAGC GGGCCAGCGG GCGTATCGAG
CTGCAGCAGG TGGTGTTCGC CTACCCGTCA CGGCCCACGG TGGCGGCAGT GGATGGCCTG
AGCCTGGCCA TCGAGCCCGG GCAGACCGTA GCGCTGGTCG GCCCCTCGGG GGCAGGCAAG
TCGACCCTAT TCGATTTGTT GCTGCGCTTC TACGACCCCC AACAAGGGCG CATTCTGCTC
GATGGCCAGG CGCTTACCGA ATTCGATCCT GACCAACTGC GCCGGCAGTT CGCCCTGGTG
GCGCAAAACC CGTCGCTGTT CCGTGGCACG GTAGAGGCCA ACATCCGTTA TGGCCGGCCC
GAGGCAACCT TGGCTGAAGT CGAAGCCGCA GCTCGCGGTG CCCACGCTGA CGCGTTTATC
CAACAACTGC CGCAGGGCTA CCAGACACCG CTAGGGGAAG GCGGCATAGG GCTTTCCGGC
GGGCAGCGTC AGCGCCTGGC GATTGCCCGG GCATTGCTGG TCGATGCGCC GATCCTGTTG
CTGGACGAAG CCACCAGTGC CCTTGACGCG CAAAGCGAAC ACTTGATCCA GCAAGCGCTG
CCCAGCCTGA TGGCTGGGCG CACCACGCTG GTGATCGCCC ATCGTCTGGC CACGGTGCAG
CATGCCGAGC GCATCGCGGT CATCGACAAG GGTCGGGTAG TGGCGGTGGG CACTCACCGT
CAGTTGATCG AGGAAAGCCC GCTGTATGCG CGGCTGGCAG CGCTGCAGTT CACCACCGGT
TAG
|
|---|
| Protein sequence | MVVCGFPSIV VVAMPESVSP RQRRALRLAW QFVRPYRRQV LLALLALVVT AAITLSMGQG
IRLLVDQGFM TRSAHQLNQT IGLFLVLVLA LAVGTFSRFY LVSWIGERCV ADIRRAVFDH
LIGLHPGFFE DNRSSEIQSR LTADTTLLQS VIGSSLSMFL RNALMVIGGV VLLFITNPKL
TSIVVVALPL VLAPILLFGR RVRSLSRQSQ DRVADVGSYV AETLGQIKTV QAYNHQAHDR
ELFAGTVEAA FTVARKRIAQ RAWLITLVIV LVLGAVGVML WVGGMDVIAG RISAGELAAF
VFYSLIVGSA FGTLSEVIGE LQRAAGAAER IAELLAAHSA ILPPAVVQAQ PQQRASGRIE
LQQVVFAYPS RPTVAAVDGL SLAIEPGQTV ALVGPSGAGK STLFDLLLRF YDPQQGRILL
DGQALTEFDP DQLRRQFALV AQNPSLFRGT VEANIRYGRP EATLAEVEAA ARGAHADAFI
QQLPQGYQTP LGEGGIGLSG GQRQRLAIAR ALLVDAPILL LDEATSALDA QSEHLIQQAL
PSLMAGRTTL VIAHRLATVQ HAERIAVIDK GRVVAVGTHR QLIEESPLYA RLAALQFTTG
|
|---|
| |