| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1648 |
|---|
| Symbol | |
|---|
| ID | 5869427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1865309 |
|---|
| End bp | 1866517 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546764 |
|---|
| Product | Rh family protein/ammonium transporter |
|---|
| Protein accession | YP_001667887 |
|---|
| Protein GI | 167032656 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.9313 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.285064 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA TGCACAGCGC GATGGACTCC CTGGTCCACG GTTCCAACAC CCTGTTCATA
CTCATGGGCG CCATTCTGGT GCTGGCCATG CATGCCGGCT TCGCGTTCCT CGAAGTGGGC
ACGGTGCGCC ACAAGAACCA GGTCAACGCC TTGTCGAAGA TCCTCAGCGA CTTTGCCATT
TCAGCGCTGG TGTACTTCTT TATAGGCTAC TGGATCGCTT ATGGGGTCAA CTTCCTCCAG
CCAGCGGCGA CCCTGGCTGC CGACCATGGC TATGCGCTGG TCAAGTGCTT CTTCCTGCTC
ACCTTCGCGG CGGCGATCCC GGCGATCATC TCGGGTGGTA TCGCCGAGCG GGCGCGCTTC
GTTCCGCAGC TGTGTGCCAC GGCGTTGATC GTGGCGTTCG TCTACCCGTT CTTCGAGGGT
GTGGTATGGA ACGGTAACCT GGGCGTGCAG GCCTGGCTGC AAGCACGCTT CGGCGCGCCG
TTCCATGACT TTGCCGGCTC TGTGGTGGTG CATGCCATGG GCGGCTGGCT GGCGCTGGCG
GCGGTGCTGT TGCTGGGTGC GCGCCGTGGG CGCTACCGCG ATGGGCGGCT GGTGGCGTTT
GCGCCGTCGA GCATTCCTTT CCTGGCACTG GGCTCGTGGA TCCTGATCAT CGGCTGGTTC
GGCTTCAACG TCATGAGCGC CCAGACCTTG CAGGGTGTCA GCGGCCTGGT GGCGATCAAC
TCGCTGATGG CCATGGTCGG CGGCACACTG TCGGCCCTGC TGGCCGGGCG CAACGACCCG
GGCTTCCTGC ACAACGGGCC GCTGGCCGGG CTGGTGGCAA TTTGCGCCGG CTCCGACCTG
ATGCACCCGA TTGGCGCACT GGCCACGGGC CTGGTGGCGG GTGCGCTGTT CGTCTGGACC
TTCACCGCAG CGCAGAACCG CTGGAAGATC GACGACGTAC TCGGCGTGTG GCCATTGCAC
GGCTTGTGCG GTGTGTGGGG TGGCATTGCC TGCGGCATCT TCGGCCAGGT GGCGTTGGGC
GGCATGGGGG GTGTCAGCCT GGTCAGCCAA CTGCTGGGCA GCCTGATGGG CGTGCTGGTG
GCCTTGGTCG GTGGCTTTGC CGTGTACGGG GCAATTCGTG CGCTGCACGG CCTGCGTTTG
AGCCATGAGC AGGAGTTCCA GGGCGCGGAC TTGTCGTTGC ACCGTATTGG CGCCACCAGC
CAGGATTGA
|
|---|
| Protein sequence | MENMHSAMDS LVHGSNTLFI LMGAILVLAM HAGFAFLEVG TVRHKNQVNA LSKILSDFAI
SALVYFFIGY WIAYGVNFLQ PAATLAADHG YALVKCFFLL TFAAAIPAII SGGIAERARF
VPQLCATALI VAFVYPFFEG VVWNGNLGVQ AWLQARFGAP FHDFAGSVVV HAMGGWLALA
AVLLLGARRG RYRDGRLVAF APSSIPFLAL GSWILIIGWF GFNVMSAQTL QGVSGLVAIN
SLMAMVGGTL SALLAGRNDP GFLHNGPLAG LVAICAGSDL MHPIGALATG LVAGALFVWT
FTAAQNRWKI DDVLGVWPLH GLCGVWGGIA CGIFGQVALG GMGGVSLVSQ LLGSLMGVLV
ALVGGFAVYG AIRALHGLRL SHEQEFQGAD LSLHRIGATS QD
|
|---|
| |