Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1642 |
Symbol | |
ID | 5869421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1859258 |
End bp | 1861648 |
Gene Length | 2391 bp |
Protein Length | 796 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641546758 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001667881 |
Protein GI | 167032650 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0928458 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTGCG CGCTCGCCCG CCTGTTGCTC GCGCTGCTGC TGTTCAGCGG TGGGACACAG GCTGCCCATC TTGAAGCCTC GTCCTTTACG TTGCTGGCAC GCACATCGTC CGCCCCGGCT CAGCCCCGGC TCACGACCGA ACAACGGCAA TGGCTGGAAG GTCGTCAGGA ACTGGTGCTG GGTACCTCGG CCCCCGACTA TCCGCCGTTT GACATCACCA GTGGCGGCCA TGATTACCAG GGCCTGACCG CCGACTACGC CAGCCTGATC GGCAAGGCCC TGCAGTTGCC GGTACGGGTG CTGCGCTTCT CCAGCCGACA GGCTGCGGTA GAGGCGCTCA GAAACGGCGA TATCGACCTG CTGGGCAGTG CCAATGGGTA CGAGGCGGAC AATGACGCCC TGGCGCTGTC ACACCCCTAT GCCATCGATC AACCGGTACT GGTAACGCGT GAAGACGAAA ACTGGGCGCT GGACCTGGAC CTGACCGGCA TGCGCCTGGG CATGCTCTAC CACTACCTGC CCAGACAGGA AGTGCTCAGC GCCTACCCCA AGGCAGAGCT GCTGGCCTTT GGTTCTTCCA GCCAGGCATT GAACGCCGTG GCGTTCGGCC AGGCCGACGT GTTCATCGGT GACACCATCT CCACGCACTA CCTGCTCAAC CGCGGCCACC TGCCACGCCT GCGCATGGCC AACTTCAGCA AGCATGAGGC CATCGGCTTC GGCTTTGCCC TGCGCCAGCA GGATACCCTG CTGTTGGACC TGGTGAACGC CGTCCTCGAC AACCAGCCCC CAGCCCTGCG CGCCAGCATC TTCAAACGCT GGAGCGCCGG CAGCGACCTA CTGTTGACCG ACCGCAACCT GCAGTTGAGC GAAAGCGAGG AACAATGGTT GCAGGATCAC CCGGTGATGC GTGTGGTCAT CGACGACACA GCTGCCCCGC TATCCTATTT CGACGACGCG GGGCATTTTC GCGGCATCAC CGCCGACCTG CTGGAGCTCA TTCGCCTGCG CACTGGTTTG CGTTTCGAAG TACAGCGCGC CAGCGGCATC GCCGACATGA TCGCTCGCCT GAAGGATGGC CGGGCGGATG TGATTGCTGC ATTGGCTACC ACGGAGGTGG GCGAGGACAA CCTCCAACTA AGCCGTCCCT ACCTGGAAAG CACCTATGTG CTGGTCAGTT GCAAGGACAA TCCGGCCTTC AATTCGCTGG ATCAACTGCA AGGTCATCGC ATCGCCATCG CCCGCTACAG CGCCATGGAC GCCATGCTGT CGCGGCACTA TCCGCAGGTC GGCTGGGTCG AGACCGAAAG CGCGTTCTAC TCGATGGCGT TACTCAACAG CGGTGCCGTA GATGCGGTGA TCACCACCCT GATAGATGCT AACCACGCCT TGGCCAGCAA CCCCGAACTG GTGATCCGCA CCTCGATCGG TAGCGAACCG GCCAATTTCG CGATGGCCAC CACTGCCCAG TCACCTGCGT TGGTGTCGAT CCTCGACAAG GCCCTGCTGA GCATCTCACC GGAGGAGCTG GGGGTAATCA ACAACCGCTG GAGCGGCTTT GGCCGACATG AAGATAACAA CGTCAGGGAC TATAGCCAGC TTGCCCTGCA GGTGGTGCTG GGCACGGCCC TGCTTCTGCT GCTGGCCTTG CTCTGGAACG CTCGCCTGCG CCTGCAGATT CGCCAGCGTC AGCATGCCGA GCGTGCGCTG AACGACCAGC TGGCATTCAT GCGTGCCCTG CTTAACGGCA CCCCCCACCC GATGTATGTG CGTGACCGCG AGGGGTGCCT GAAAAGTTGT AACTACAGCT ACCTCGAAGC CGTGCAGGCC AGCTCTGATC AGGTTATCGG CAAACAGCTG GACTGCAGCC TGTTCGCCGA TAGCGAGCAG ACTCGGCAGA TCCAGGCTGA TCACCTGGAA GTCATGGCCG CGGGCTCACC GCTGATCAAG GACCGTCCAC TACGGATCAA GGGTCGGGAA CTGACCATCT ACCACTGGAT CTTGCCGTAC CGCGACTCCC TGGGTGAAGT GCAGGGCATC ATCGGCGGCT GGATAGACAT CAGCGATCGC CGCCAACTGG TCATGGATCT GCGCCAGGCC AAGCAGCAGG CGGACGATGC CAACCGCGCC AAAAGCACGT TTCTGGCCAC CATCAGCCAC GAAATTCGCA CCCCGATGAA CGCCGTCATC GGCATGCTCG AGCTGGCAGT CAAGCGTGCC GACCAGGGCC GGGTGGACCG CAGCGCGCTG GAGCTGGCAC ACCATTCGGC CAAGGACCTG CTGGGCCTGA TCGGCGATAT TCTGGATATG GTAAGTTTTG CTTTTTACCT ACCTAATCAT CACCCTCTCA GCCCGCGGAT TCTGCGGCTC TTGCTAGAAA AATTATTTTG A
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Protein sequence | MTCALARLLL ALLLFSGGTQ AAHLEASSFT LLARTSSAPA QPRLTTEQRQ WLEGRQELVL GTSAPDYPPF DITSGGHDYQ GLTADYASLI GKALQLPVRV LRFSSRQAAV EALRNGDIDL LGSANGYEAD NDALALSHPY AIDQPVLVTR EDENWALDLD LTGMRLGMLY HYLPRQEVLS AYPKAELLAF GSSSQALNAV AFGQADVFIG DTISTHYLLN RGHLPRLRMA NFSKHEAIGF GFALRQQDTL LLDLVNAVLD NQPPALRASI FKRWSAGSDL LLTDRNLQLS ESEEQWLQDH PVMRVVIDDT AAPLSYFDDA GHFRGITADL LELIRLRTGL RFEVQRASGI ADMIARLKDG RADVIAALAT TEVGEDNLQL SRPYLESTYV LVSCKDNPAF NSLDQLQGHR IAIARYSAMD AMLSRHYPQV GWVETESAFY SMALLNSGAV DAVITTLIDA NHALASNPEL VIRTSIGSEP ANFAMATTAQ SPALVSILDK ALLSISPEEL GVINNRWSGF GRHEDNNVRD YSQLALQVVL GTALLLLLAL LWNARLRLQI RQRQHAERAL NDQLAFMRAL LNGTPHPMYV RDREGCLKSC NYSYLEAVQA SSDQVIGKQL DCSLFADSEQ TRQIQADHLE VMAAGSPLIK DRPLRIKGRE LTIYHWILPY RDSLGEVQGI IGGWIDISDR RQLVMDLRQA KQQADDANRA KSTFLATISH EIRTPMNAVI GMLELAVKRA DQGRVDRSAL ELAHHSAKDL LGLIGDILDM VSFAFYLPNH HPLSPRILRL LLEKLF
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