Gene PputGB1_1642 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_1642 
Symbol 
ID5869421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1859258 
End bp1861648 
Gene Length2391 bp 
Protein Length796 aa 
Translation table11 
GC content62% 
IMG OID641546758 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001667881 
Protein GI167032650 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0928458 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTGCG CGCTCGCCCG CCTGTTGCTC GCGCTGCTGC TGTTCAGCGG TGGGACACAG 
GCTGCCCATC TTGAAGCCTC GTCCTTTACG TTGCTGGCAC GCACATCGTC CGCCCCGGCT
CAGCCCCGGC TCACGACCGA ACAACGGCAA TGGCTGGAAG GTCGTCAGGA ACTGGTGCTG
GGTACCTCGG CCCCCGACTA TCCGCCGTTT GACATCACCA GTGGCGGCCA TGATTACCAG
GGCCTGACCG CCGACTACGC CAGCCTGATC GGCAAGGCCC TGCAGTTGCC GGTACGGGTG
CTGCGCTTCT CCAGCCGACA GGCTGCGGTA GAGGCGCTCA GAAACGGCGA TATCGACCTG
CTGGGCAGTG CCAATGGGTA CGAGGCGGAC AATGACGCCC TGGCGCTGTC ACACCCCTAT
GCCATCGATC AACCGGTACT GGTAACGCGT GAAGACGAAA ACTGGGCGCT GGACCTGGAC
CTGACCGGCA TGCGCCTGGG CATGCTCTAC CACTACCTGC CCAGACAGGA AGTGCTCAGC
GCCTACCCCA AGGCAGAGCT GCTGGCCTTT GGTTCTTCCA GCCAGGCATT GAACGCCGTG
GCGTTCGGCC AGGCCGACGT GTTCATCGGT GACACCATCT CCACGCACTA CCTGCTCAAC
CGCGGCCACC TGCCACGCCT GCGCATGGCC AACTTCAGCA AGCATGAGGC CATCGGCTTC
GGCTTTGCCC TGCGCCAGCA GGATACCCTG CTGTTGGACC TGGTGAACGC CGTCCTCGAC
AACCAGCCCC CAGCCCTGCG CGCCAGCATC TTCAAACGCT GGAGCGCCGG CAGCGACCTA
CTGTTGACCG ACCGCAACCT GCAGTTGAGC GAAAGCGAGG AACAATGGTT GCAGGATCAC
CCGGTGATGC GTGTGGTCAT CGACGACACA GCTGCCCCGC TATCCTATTT CGACGACGCG
GGGCATTTTC GCGGCATCAC CGCCGACCTG CTGGAGCTCA TTCGCCTGCG CACTGGTTTG
CGTTTCGAAG TACAGCGCGC CAGCGGCATC GCCGACATGA TCGCTCGCCT GAAGGATGGC
CGGGCGGATG TGATTGCTGC ATTGGCTACC ACGGAGGTGG GCGAGGACAA CCTCCAACTA
AGCCGTCCCT ACCTGGAAAG CACCTATGTG CTGGTCAGTT GCAAGGACAA TCCGGCCTTC
AATTCGCTGG ATCAACTGCA AGGTCATCGC ATCGCCATCG CCCGCTACAG CGCCATGGAC
GCCATGCTGT CGCGGCACTA TCCGCAGGTC GGCTGGGTCG AGACCGAAAG CGCGTTCTAC
TCGATGGCGT TACTCAACAG CGGTGCCGTA GATGCGGTGA TCACCACCCT GATAGATGCT
AACCACGCCT TGGCCAGCAA CCCCGAACTG GTGATCCGCA CCTCGATCGG TAGCGAACCG
GCCAATTTCG CGATGGCCAC CACTGCCCAG TCACCTGCGT TGGTGTCGAT CCTCGACAAG
GCCCTGCTGA GCATCTCACC GGAGGAGCTG GGGGTAATCA ACAACCGCTG GAGCGGCTTT
GGCCGACATG AAGATAACAA CGTCAGGGAC TATAGCCAGC TTGCCCTGCA GGTGGTGCTG
GGCACGGCCC TGCTTCTGCT GCTGGCCTTG CTCTGGAACG CTCGCCTGCG CCTGCAGATT
CGCCAGCGTC AGCATGCCGA GCGTGCGCTG AACGACCAGC TGGCATTCAT GCGTGCCCTG
CTTAACGGCA CCCCCCACCC GATGTATGTG CGTGACCGCG AGGGGTGCCT GAAAAGTTGT
AACTACAGCT ACCTCGAAGC CGTGCAGGCC AGCTCTGATC AGGTTATCGG CAAACAGCTG
GACTGCAGCC TGTTCGCCGA TAGCGAGCAG ACTCGGCAGA TCCAGGCTGA TCACCTGGAA
GTCATGGCCG CGGGCTCACC GCTGATCAAG GACCGTCCAC TACGGATCAA GGGTCGGGAA
CTGACCATCT ACCACTGGAT CTTGCCGTAC CGCGACTCCC TGGGTGAAGT GCAGGGCATC
ATCGGCGGCT GGATAGACAT CAGCGATCGC CGCCAACTGG TCATGGATCT GCGCCAGGCC
AAGCAGCAGG CGGACGATGC CAACCGCGCC AAAAGCACGT TTCTGGCCAC CATCAGCCAC
GAAATTCGCA CCCCGATGAA CGCCGTCATC GGCATGCTCG AGCTGGCAGT CAAGCGTGCC
GACCAGGGCC GGGTGGACCG CAGCGCGCTG GAGCTGGCAC ACCATTCGGC CAAGGACCTG
CTGGGCCTGA TCGGCGATAT TCTGGATATG GTAAGTTTTG CTTTTTACCT ACCTAATCAT
CACCCTCTCA GCCCGCGGAT TCTGCGGCTC TTGCTAGAAA AATTATTTTG A
 
Protein sequence
MTCALARLLL ALLLFSGGTQ AAHLEASSFT LLARTSSAPA QPRLTTEQRQ WLEGRQELVL 
GTSAPDYPPF DITSGGHDYQ GLTADYASLI GKALQLPVRV LRFSSRQAAV EALRNGDIDL
LGSANGYEAD NDALALSHPY AIDQPVLVTR EDENWALDLD LTGMRLGMLY HYLPRQEVLS
AYPKAELLAF GSSSQALNAV AFGQADVFIG DTISTHYLLN RGHLPRLRMA NFSKHEAIGF
GFALRQQDTL LLDLVNAVLD NQPPALRASI FKRWSAGSDL LLTDRNLQLS ESEEQWLQDH
PVMRVVIDDT AAPLSYFDDA GHFRGITADL LELIRLRTGL RFEVQRASGI ADMIARLKDG
RADVIAALAT TEVGEDNLQL SRPYLESTYV LVSCKDNPAF NSLDQLQGHR IAIARYSAMD
AMLSRHYPQV GWVETESAFY SMALLNSGAV DAVITTLIDA NHALASNPEL VIRTSIGSEP
ANFAMATTAQ SPALVSILDK ALLSISPEEL GVINNRWSGF GRHEDNNVRD YSQLALQVVL
GTALLLLLAL LWNARLRLQI RQRQHAERAL NDQLAFMRAL LNGTPHPMYV RDREGCLKSC
NYSYLEAVQA SSDQVIGKQL DCSLFADSEQ TRQIQADHLE VMAAGSPLIK DRPLRIKGRE
LTIYHWILPY RDSLGEVQGI IGGWIDISDR RQLVMDLRQA KQQADDANRA KSTFLATISH
EIRTPMNAVI GMLELAVKRA DQGRVDRSAL ELAHHSAKDL LGLIGDILDM VSFAFYLPNH
HPLSPRILRL LLEKLF