| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1599 |
|---|
| Symbol | |
|---|
| ID | 5869379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1805810 |
|---|
| End bp | 1806376 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641546717 |
|---|
| Product | RNA polymerase sigma factor SigX |
|---|
| Protein accession | YP_001667840 |
|---|
| Protein GI | 167032609 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000000868927 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00213094 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTATG ACCCCCGCGA GCTCACCGAC GAAGAGTTGG TGGCGCGTTC GCATGAGGAG
CTGTACCACG TTACCCGCGC CTATGAGGAG CTCATGCGGC GCTACCAGCG GACCCTGTTC
AACGTCTGTG CGCGTTATCT GGGGAACGAC CGGGACGCGG ACGATGTCTG TCAGGAGGTG
ATGCTCAAAG TGCTGTATGG GCTGAAGAAC TTCGAGGGTA AATCCAAGTT CAAGACCTGG
CTCTACAGCA TCACCTACAA CGAGTGCATT ACCCAGTACC GCAAGGAGCG CCGTAAACGT
CGGTTAATGG ATGCCTTGAG CCTGGACCCT GTTGAAGAGG CGTCTGAAGA CAAGGCCCCG
AAGCCGGAAG AAAAAGGCGG GCTGGACAAG TGGTTGGTGC ATGTGAACCC GATTGACCGG
GAAATTCTGG TGCTACGTTT TGTCGCAGAA TTGGAATTTC AGGAAATTGC CGACATCATG
CACATGGGTC TTAGCGCGAC GAAAATGCGT TACAAGCGCG CGCTAGACAA GCTTCGTGAG
AAATTTGCTG GCCTCGATGA AACTTAG
|
|---|
| Protein sequence | MRYDPRELTD EELVARSHEE LYHVTRAYEE LMRRYQRTLF NVCARYLGND RDADDVCQEV
MLKVLYGLKN FEGKSKFKTW LYSITYNECI TQYRKERRKR RLMDALSLDP VEEASEDKAP
KPEEKGGLDK WLVHVNPIDR EILVLRFVAE LEFQEIADIM HMGLSATKMR YKRALDKLRE
KFAGLDET
|
|---|
| |