| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1557 |
|---|
| Symbol | |
|---|
| ID | 5869337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1753698 |
|---|
| End bp | 1754936 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546675 |
|---|
| Product | nuclease SbcCD, D subunit |
|---|
| Protein accession | YP_001667798 |
|---|
| Protein GI | 167032567 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.436101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.347672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTGT TTCATACCTC CGACTGGCAC CTGGGCCAAA GCCTGCACGG CCAGGAACGC
GACTTCGAAC ACGCCTGCTT CCTCGACTGG CTGCTCGGCC AGCTGCACCT GCGTCAACCC
GATGCGCTGC TGATCGCCGG CGATATCTTC GACACGGTCA ACCCGCCGGT CAAAGCCCAG
GAACGCCTCT ACGACTTCAT CGTCCAGGCC CACGAGCAAC AGCCCAAGCT GGACATCGTG
ATGATCGCCG GCAACCACGA CTCGGGCTCG CGCATCGAAC TGCCCGCCGC GCTCATGCGG
CGCCTGCGCA CCCATGCCCT GGGCCGTGTG CACTGGCTGG ACGAAGGCCA GCTGGATGCC
GAGCGGCTGC TGATTCCGCT GACCAACGGC CGTGGCAAGG TCGCTGCCTG GTGCCTGGCC
CTGCCTTTCC TGCGCCCGGC TGAAGTGACC GGCCCGCACC TGGGTGACGA CTACCTGCAA
GGCATCACCC AGGTGCACCA GCAACTGATC GCCGCCGCGC AAAAAAAGCG CAAGAAAGAC
CAGGCGCTGA TCGCCATCAG CCATGCACAC ATGGCCGGTG GATCCGTGTC GGAAGACTCC
GAACGCAGCC TGATCATCGG CAATGCCGAG GCGCTGCCGG CCAAGCTGTT CGACAAGGCC
ATCAGCTACG TTGCCCTGGG CCACCTGCAC AAACCGCAGA AGGTCAACCG CGAAGAGCGT
ATTCGCTACA GCGGCTCGCC GATTCCGCTG TCGTTCGCCG AAATCAACTA CCCACACCAG
GTGCTGGAAG TGGAGCTGGA CGGCGCTGGC CTGGTCAGCG TCGAACCGCG CCCGGTACCG
CGCGCGGTAG CCCTGCAACG GGTGGGCCCG GCACCGTTGG GCGAGCTGCT GCAGCAACTG
GCCGACCTGC CGGTGATCGA CCTGCTCGAA GACCCCAACC GCCAACCCTG GCTGGAAGTG
CGGGTTGTTC TGGACGAGCC GCAACCCGAC CTGCGCCAGC AAATCGAAAC CGCGCTGGAG
GGTAAGGCGG TACGGTTGAT CCGCATCAGC GCCGAATACG CTGGCCGCAC CAACGCCGAA
GATGACGACT TGGCCTTTGT CGAACTGGCC CAGATGACCC CGCAAGATCT GTTCAGCCGT
GCCTGGGAGC AAGCCTACGG CAACCCCGCC GACGAGCAGG CGCTGGCCGA CTTCGCCCTG
CTGTTGCAGG ACGTGCAGCA GGAAGAGGAA CAGCCATGA
|
|---|
| Protein sequence | MRLFHTSDWH LGQSLHGQER DFEHACFLDW LLGQLHLRQP DALLIAGDIF DTVNPPVKAQ
ERLYDFIVQA HEQQPKLDIV MIAGNHDSGS RIELPAALMR RLRTHALGRV HWLDEGQLDA
ERLLIPLTNG RGKVAAWCLA LPFLRPAEVT GPHLGDDYLQ GITQVHQQLI AAAQKKRKKD
QALIAISHAH MAGGSVSEDS ERSLIIGNAE ALPAKLFDKA ISYVALGHLH KPQKVNREER
IRYSGSPIPL SFAEINYPHQ VLEVELDGAG LVSVEPRPVP RAVALQRVGP APLGELLQQL
ADLPVIDLLE DPNRQPWLEV RVVLDEPQPD LRQQIETALE GKAVRLIRIS AEYAGRTNAE
DDDLAFVELA QMTPQDLFSR AWEQAYGNPA DEQALADFAL LLQDVQQEEE QP
|
|---|
| |