| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1540 |
|---|
| Symbol | |
|---|
| ID | 5869320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1732736 |
|---|
| End bp | 1734772 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546658 |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase |
|---|
| Protein accession | YP_001667781 |
|---|
| Protein GI | 167032550 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.871647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.815252 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCG ACCGCTACCC GCACCTGCTT GCTCCGCTGG ACCTAGGCTT TACCACCTTG
CGCAACCGTA CCCTGATGGG GTCAATGCAC ACCGGCCTCG AGGAACGCCC CGGTGGTTTC
GAGCGCATGG CCGCGTACTT TGCCGAGCGC GCCCGGGGTG GCGTTGGCTT GATGGTCACT
GGCGGCATCG CGCCCAATGA TGAAGGCGGG GTGTATTCCG GCGCGGCCAA GCTCAGCACC
GAGGAAGAGG CTGACAAGCA CCGCATCGTC ACCGAGGCGG TGCACGCCGC CGGTGGCAAG
GTCTGCCTGC AGATCCTGCA TGCCGGGCGC TATGCCTACA GCCCACGGCA AGTGGCGCCT
AGCGCGATCC AGGCGCCGAT CAACCCGTTC AAGCCCAAGG AGCTGGACGA GGCGGGCATC
GAGAAACAGA TTGCCGACTT CGTCAATTGT GCGGCGTTGG CCCAGCGCGC CGGTTACGAC
GGTGTCGAGA TCATGGGGTC GGAAGGCTAC TTCATCAACC AGTTCCTCGC CGCCCACACC
AACCACCGCA CCGATCGCTG GGGCGGCAGC TATGAAAACC GCATGCGCCT GGCCGTGGAA
ATCGTCAGCC GGGTGCGTGG TGCGGTAGGG CCGAACTTCA TCATCATCTT CCGCCTGTCG
ATGCTCGATC TGGTCGAGGG TGGCAGCACC TGGGACGAAA TCGAGCTGCT GGCCAAGGCT
ATCGAGCAGG CCGGTGCGAC CCTGATCAAC ACCGGCATCG GCTGGCACGA AGCGCGTATC
CCGACCATCG CCACCAAGGT GCCGCGTGCG GCGTTCAGCA AAGTCACCGC CAAACTGCGC
GGTGTGGTGA ACATTCCGCT GATCACCACC AACCGCATCA ATACCCCGGA AGTGGCCGAG
GCGGTGCTGG CCGAGGGGGA TGCCGACATG GTCTCGATGG CTCGACCGTT CCTCGCCGAC
CCGGATTTCG TCAACAAGGC CGCCGCTGGC CGAGCCGACG AAATCAACAC CTGCATTGGC
TGCAACCAGG CCTGCCTGGA CCACACCTTT GGCGGCAAGC TGACCAGTTG CCTGGTCAAC
CCGCGTGCCT GCCACGAAAC CGAACTCAAC TACTTGCCTG TGCGCGCGGT GAAGCGTATC
GCCGTGGTCG GCGCCGGGCC GGCAGGCCTG GCGGCGGCCA CCGTGGCGGC CGAGCGGGGC
CATGCCGTGA CCCTGTTTGA CGCCGCCAGC GAAATCGGTG GCCAGTTCAA CGTGGCCAAG
CGGGTGCCGG GCAAAGAAGA ATTCTTTGAA ACGCTGCGTT ACTTCCGCAA CAAGGTCAAA
AGCACGGGCG TGGAGCTGCG CCTGAATACT CGCGTCGATG TGCAGGCACT GGTGGAGGGT
GGCTTTGATG AAATTATCCT GGCCACCGGT ATCGCCCCGC GTACCCCAGC CATTCCGGGT
GTGGAGCATG CCAAGGTGCT CAGCTACCTG GATGTGTTGC TCGAGCGCAA GCCGGTGGGC
AAGGCTGTCG CGGTGATTGG CGCGGGAGGC ATTGGCTTTG ATGTGTCCGA GTACCTGGTG
CACCAGGGCG TGGCCTCCAG CCAGGACCGT GACGCATTCT GGAAAGAGTG GGGCATCGAT
ACCCATCTTG AGGCACGCGG TGGGGTGGCC GGGATCAAGG CCGAGCCGCA TGCCCCGGCA
CGGCAGGTTT ACCTGTTGCA GCGCAAGAAG TCCAAGGTGG GTGATGGCCT GGGCAAGACG
ACCGGCTGGA TTCACCGCAC CGGGTTGAAG AACAAGCGGG TGCAGATGCT CAACAGCGTC
GAGTACCTGG GTATCGACGA TGCCGGTTTG CACATTCGCG TGGCGGACGG CGAGCCGCAG
GTGTTGCCGG TGGACAACGT GGTGATCTGC GCCGGGCAGG AACCGCTGCG CGAGTTGCAG
GACGGGCTGG TGGCGGCGGG GCAGTCGGTG CACCTGATTG GTGGCGCGGA TGTGGCGGCC
GAGCTGGACG CCAAGCGGGC GATCAACCAG GGGTCGCGAT TAGCGGCTGA GCTTTGA
|
|---|
| Protein sequence | MAADRYPHLL APLDLGFTTL RNRTLMGSMH TGLEERPGGF ERMAAYFAER ARGGVGLMVT
GGIAPNDEGG VYSGAAKLST EEEADKHRIV TEAVHAAGGK VCLQILHAGR YAYSPRQVAP
SAIQAPINPF KPKELDEAGI EKQIADFVNC AALAQRAGYD GVEIMGSEGY FINQFLAAHT
NHRTDRWGGS YENRMRLAVE IVSRVRGAVG PNFIIIFRLS MLDLVEGGST WDEIELLAKA
IEQAGATLIN TGIGWHEARI PTIATKVPRA AFSKVTAKLR GVVNIPLITT NRINTPEVAE
AVLAEGDADM VSMARPFLAD PDFVNKAAAG RADEINTCIG CNQACLDHTF GGKLTSCLVN
PRACHETELN YLPVRAVKRI AVVGAGPAGL AAATVAAERG HAVTLFDAAS EIGGQFNVAK
RVPGKEEFFE TLRYFRNKVK STGVELRLNT RVDVQALVEG GFDEIILATG IAPRTPAIPG
VEHAKVLSYL DVLLERKPVG KAVAVIGAGG IGFDVSEYLV HQGVASSQDR DAFWKEWGID
THLEARGGVA GIKAEPHAPA RQVYLLQRKK SKVGDGLGKT TGWIHRTGLK NKRVQMLNSV
EYLGIDDAGL HIRVADGEPQ VLPVDNVVIC AGQEPLRELQ DGLVAAGQSV HLIGGADVAA
ELDAKRAINQ GSRLAAEL
|
|---|
| |