| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1514 |
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| Symbol | |
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| ID | 5869290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1698422 |
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| End bp | 1701718 |
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| Gene Length | 3297 bp |
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| Protein Length | 1098 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641546628 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001667755 |
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| Protein GI | 167032524 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAT CAGCAAACCG CTTTTTGCGC CTGCCGCGAA TACCTGCGGC TGATCCCCAG
GAGTCCGAGC AGGCCTGGCA GAACGCGCCA CAACTGCTGG CCGCGCTCAA CGGCGCGCGC
CTGGGCGCCT GGCTGTGGGA CATCGAAAGC GGCAGGGTCA GCTGGTCGCG GGGCACCCAA
GCCCTGTTCG GCTTCGATCC GCAGCGGCCA CTGCCCGCCG ATATCGATTA CCTGGACCTG
CTGCCCGAGG AGGATCGCGC CCGCACCCGC CAGGTGTTCC AGGCGGTGTT CAACGGCGAG
CCCGTGGAGC AGGCCATGCG CCACCGTATC CGCTGGCCGG ACGGTAGCCT GCACTGGCTT
GAGATCAACG GCAGCCTGAC CCACGACCCG CAGGGCCGGC CGCAGATGAT CGGGGTGATC
CGCGAAATCA CCCGCCAGCG CGAACGGGAA ACGGCGCTGA TCAATTCGGA AAAGCGCTTC
GCCACGCTGT TCCACCTCAG CCCCAACGCT ATTTTGCTGA CCCGTCGGCA CGACGGCATG
ATTTTCGAAG TGAACCAGCA TTTCGAGGAC ATGTTCGGCT GGCCCGGCAG CCAGGTGATC
GGCAAGACCA GCCTGGAGTT GGGCCTGTGG GTCAACCCCG AACAGCGCCA CCAGGTCATG
GAATCCACCC GCGCCAACGG CGGCCCGCTG ATCATGGAGG TGCAGTTCCG CGCCACCAGC
GGCAAAGTGC ATGACGGCAT CCTCTGCACC CAGGGTATCG AGCTGGAGGG CGTGACCTTC
CTGATCAGTA CCTTCGTCGA CACCACCGAA CGCAAGCGCG CCGAGCAGGC CCTGAAAGAC
AGCCAGGAGC GCCTGGACCT GGCCCTGGAC TCGGCGCAGC TGGGCACCTG GGACTGGCAC
ATCCCCAGCG GCATGCTCTA CGGCTCGGCC CGCGCCGCGC AGCTGCACGG CCTACCGCCG
ATCCCCTTTC ATGAATCGTT CGATGCGTTT TTCGAAGGGG TACCGGAGCA GGAACGCAAT
TCGATGCGCC AGGCCTACCG CAGCCTGCGC GAAGGGCCTG CGGGCAATTA CCAGATTACC
TACCGGGTGC AGCTGGAAAG CGGCATTTCA CGCTACATCG AAAGCCGCGC GCGGCTGTAC
CGCGACGAGC AGGGCAACCC GCTGCGCATG GCAGGCACCC TGCTCGACAT TACCGACCAG
GTGGAACGCG AGCAGCGCCT TAGCGCCTCG GAGGAGAAGT TTGCCAGCCT GTTCCAGGTC
AGCCCCGACC CGATCTGCGT CACCCGCCAG GACACGGGCC AGTTCATCGA GATCAACCCG
GCATTCACCC AGACCTTCGG CTGGAACGGC GAACAGGTAC TTGGCCGCAC TGCAGAAGAG
ATCGGCCTGT GGGCCGAGTC CATCGAGCGC GCGCAACGTA TCGAGCGAGT GATCCGCGAG
CAGGCCCTGA GCAATGTTGC CGTGGTGGTC AATCACCGCA ATGGCGCGCC CCTGACCTGC
GTGATTTCCA GCCGCCTGAT CACCGTCGAC GACCAGCCCT GCAGCGTTAC CACCCTGCGC
GACATTACCC AGCAGCAACG TGCCGAGGCC GCGCTCAAGT CCAGCGAAGA AAAGTTCGCC
AAGGCCTTCC ACTCCAGCCC CGACGCCATC ACCATCACCG AACGCCACAG CGGCCGCTAC
CTGGAAATCA ATGACGGCTT CTGCCGCCTG ACCGGTTACA GCGCAGCCGA AGTGGTGGGC
CACACGGTGT ACGAGATCGG CATCTGGGCC GACGACAAGC AGCGCAGCGC ACTGCTGGCC
GAACTGCGCG AGCGTGGCCG GGTGCACCAC CGCGAGATGC TCGGGCGCAA CAAACGAGGC
GATATCCTCA CCGTTGAGGT TTCGGTGGAA CCGATAACCC TCAATGAAGT GGACTGCCTG
CTGCTGAACG CCCGCGACGT CAGCCAGCTG AAGAACGCCC AGGCACAGAT ACGCCACCTG
GCCTACCACG ACCCGCTGAC CAACCTGCCA AACCGTGCCC TGCTGATGGA CCGCCTGAGC
CAGCAGATCG CCCTGCTCAA GCGCCATAAC CTGCGCGGCG CCCTGCTGTT CCTCGACCTC
GACCACTTCA AGCACATCAA CGATTCGCTG GGCCACCCGG TGGGCGACAC CGTGCTGAAG
ATCATCACCG CCCGACTGGA GGCCAGCGTG CGCCTGGAAG ACACCGTGGC GCGGCTGGGT
GGCGACGAAT TCGTGGTGCT GCTCAGCGGC CTGGAAGGCA GCCGCGAACT GGTGGAAGAG
AAGGTGCGCG AGCTGGCCGA CACCCTGCGC GAACTGCTGG CCGAGCCGAT GTCGCTGGAT
GGCCAGCGCC TGCAGGTGAC ACCCAGCATC GGCGTGGCAC TGATCCCCGA CCACGGCGCC
ACGCCGGCCG ACCTGCTCAA GCGTGCCGAT ATCGCCCTGT ACCGGGCCAA GGACTCGGGA
CGCAACACCA CCCAACTGTT CCACACCACC ATGCAGAAGG CCGCCAGCGA GCGCTTGCGC
ATGGAAAACG ACCTGCGCCT GGCATTGGCC CGTGGCGAAC TGGCGCTGCA CTTCCAGCCG
CAGGTGGATG CCCGCGACAA CCGCATTGTC GGCGCCGAAG TGCTGCTGCG CTGGCACCAC
CCTCAACTGG GCCAGCAACC GCCCGCACAG TTCATTCAGG TGCTGGAAGA AAGCGGCCTG
ATCCTTGAAG TTGGCAGCTG GATTCTCGAC GAAGCCTGCG ACGCCTGCGC CCGCATGCTG
ACCGACGGGC TGATCGACGC CGATGACTTC AGCCTGTGCG TGAACATCAG CCCCAGGCAG
TTCCGCCAGA ACGACTTTGT CGGCCGGGTG CTGCGCAGCC TGGACGACTA TCGCCTGCCG
CGGCATATGC TGAAACTGGA AATCACCGAA GGCATTGTCA TCCAGAATCT GGAAGACACC
ATCAGCAAGA TGCGCGAACT GAAGCGCTAC GGGGTGAGTT TTGCCATGGA TGACTTTGGC
ACCGGCTATT CCTCGCTGAC CTACCTCAAG CGCTTGCCGG TGGATGCGTT GAAGATCGAC
CAGACCTTCG TGCGCGATGC ACCGATCGAC CCCAACGACG CCGAAATCGT CCGCGCCATC
GTCGCCATGG CCCGCAGCCT GGACCTGGCG GTGATTGCCG AAGGGGTGGA GCTGACCGAA
CAGCTGGAGT TTCTCGAACG GCTGGGCTGC CACCTGTACC AGGGGTATCT GCACAGCCGG
CCGCTGCCGT TGCCGGAGTT TCGGCAGATG CTACTGGAGG CGCCCGCAGA TTATTGA
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| Protein sequence | MPKSANRFLR LPRIPAADPQ ESEQAWQNAP QLLAALNGAR LGAWLWDIES GRVSWSRGTQ
ALFGFDPQRP LPADIDYLDL LPEEDRARTR QVFQAVFNGE PVEQAMRHRI RWPDGSLHWL
EINGSLTHDP QGRPQMIGVI REITRQRERE TALINSEKRF ATLFHLSPNA ILLTRRHDGM
IFEVNQHFED MFGWPGSQVI GKTSLELGLW VNPEQRHQVM ESTRANGGPL IMEVQFRATS
GKVHDGILCT QGIELEGVTF LISTFVDTTE RKRAEQALKD SQERLDLALD SAQLGTWDWH
IPSGMLYGSA RAAQLHGLPP IPFHESFDAF FEGVPEQERN SMRQAYRSLR EGPAGNYQIT
YRVQLESGIS RYIESRARLY RDEQGNPLRM AGTLLDITDQ VEREQRLSAS EEKFASLFQV
SPDPICVTRQ DTGQFIEINP AFTQTFGWNG EQVLGRTAEE IGLWAESIER AQRIERVIRE
QALSNVAVVV NHRNGAPLTC VISSRLITVD DQPCSVTTLR DITQQQRAEA ALKSSEEKFA
KAFHSSPDAI TITERHSGRY LEINDGFCRL TGYSAAEVVG HTVYEIGIWA DDKQRSALLA
ELRERGRVHH REMLGRNKRG DILTVEVSVE PITLNEVDCL LLNARDVSQL KNAQAQIRHL
AYHDPLTNLP NRALLMDRLS QQIALLKRHN LRGALLFLDL DHFKHINDSL GHPVGDTVLK
IITARLEASV RLEDTVARLG GDEFVVLLSG LEGSRELVEE KVRELADTLR ELLAEPMSLD
GQRLQVTPSI GVALIPDHGA TPADLLKRAD IALYRAKDSG RNTTQLFHTT MQKAASERLR
MENDLRLALA RGELALHFQP QVDARDNRIV GAEVLLRWHH PQLGQQPPAQ FIQVLEESGL
ILEVGSWILD EACDACARML TDGLIDADDF SLCVNISPRQ FRQNDFVGRV LRSLDDYRLP
RHMLKLEITE GIVIQNLEDT ISKMRELKRY GVSFAMDDFG TGYSSLTYLK RLPVDALKID
QTFVRDAPID PNDAEIVRAI VAMARSLDLA VIAEGVELTE QLEFLERLGC HLYQGYLHSR
PLPLPEFRQM LLEAPADY
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