| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1505 |
|---|
| Symbol | |
|---|
| ID | 5869275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1687305 |
|---|
| End bp | 1689320 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546613 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001667746 |
|---|
| Protein GI | 167032515 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGT TCCAGCTCGT CACCCGTTTC CAGCCGGCAG GCGACCAGCC CGAGGCCATC
CGCCAGTTGG TCGAAGGCAT CGAGGCGGGG CTGTCGCACC AGACGCTGCT CGGCGTGACG
GGCTCGGGCA AGACCTTCAG CATTGCCAAC GTCATCCAGC ACGTGCAGCG CCCGACGTTG
GTGCTGGCGC CGAACAAGAC CCTGGCCGCA CAGCTGTACG GCGAGTTCAA GGCGTTCTTC
CCCAACAATG CGGTGGAGTA CTTCGTCTCC TATTACGACT ACTACCAGCC GGAAGCCTAC
GTGCCGTCGT CGGACACCTT CATCGAGAAG GACGCCTCGA TCAACGACCA CATCGAGCAG
ATGCGCCTGT CGGCGACCAA AGCGCTGCTG GAGCGGCGCG ACGCCATCAT CGTCACCACC
GTCTCGTGCA TCTATGGCCT GGGCAGCCCC GAGACCTACC TGAAAATGGT CCTGCACGTG
GACCGTGGCG ACAAGCTCGA CCAGCGCGCG CTGCTGCGCC GCTTGGCGGA CTTGCAGTAC
ACCCGCAATG AAATGGACTT TGCCCGTGCC ACCTTCCGCG TGCGGGGCGA TGTGATCGAC
ATTTTCCCGG CGGAATCGGA CCTGGAGGCC ATCCGCATCG AGCTGTTCGA TGATGAGGTG
GAGAACATCG CCGCCTTCGA CCCGCTGACC GGCGAGGTTT TCCGCAAGCT GCCGCGTTTC
ACCTTCTATC CCAAGAGCCA CTATGTCACC CCGCGTGAAA CGCTGCTGGA AGCAGTGGAG
GGCATCAAGG AAGAACTGAA GGAGCGCCTG GAATACCTGC ACAAGGCCAA CAAGCTGGTC
GAGGCGCAGC GCCTGGAGCA ACGCACCCGC TTCGACCTGG AGATGATCCT CGAGCTTGGC
TACTGCAATG GCATCGAAAA CTACTCGCGC TATCTGTCCG GGCGCCCGGC CGGGGCGCCG
CCGCCTACCC TGTACGACTA CCTGCCGCCC GATGCGCTGC TGGTGATCGA CGAATCCCAC
GTCAGCGTTC CGCAGGTCGG CGCCATGTAC AAGGGCGACC GCTCACGCAA GGAAACCCTG
GTCGAGTATG GCTTTCGCAT GCCTTCGGCA CTGGACAACC GGCCGATGCG TTTCGACGAG
TGGGAGGATG TCAGCCCGCA GACCATTTTC GTTTCAGCGA CCCCTGGTCC CTACGAAGCT
GAGCATGCCG GGCGCGTGGT GGAGCAGGTG GTGCGCCCGA CCGGCCTGGT CGACCCGCAG
GTCGAAATAC GCCCGGCGCT GACTCAGGTC GATGACTTGT TGTCCGAGAT CCGCAAGCGT
GTCGCGGCAG GCGAGCGTGT GCTGGCGACA ACCCTGACCA AGCGCATGGC CGAAGACCTT
AGCGACTACC TGGCCGATCA CGACGTGCGG GTGCGCTATC TGCACTCGGA CATTGACACT
GTAGAGCGAG TGGAGATTAT CCGTGACCTG CGCCTGGGCA CCTTCGACGT GCTGGTAGGT
ATCAACCTGC TGCGCGAAGG CTTGGACATG CCCGAGGTGT CACTGGTGGC GATCCTCGAT
GCGGACAAGG AAGGCTTCCT GCGTTCCGAG CGCTCACTGA TTCAGACCAT TGGCCGTGCT
GCGCGTAACC TCAATGGCCG GGCCATCCTC TACGCCGACA ATGTGACGGG CTCGATGCAG
CGAGCGATCG ATGAAACCGA GCGCCGCCGC GAGAAGCAGA TCGCGTTCAA CGAGGCCAAC
GGTATCGTGC CCAAGGGCGT GGTCAAGGAC ATCACCGACA TCCTGGAAGG TGCCACGGTA
CCTGGCGCGC GCAGCAAGAA GCGCAAGGGC ATGGCCAAGG CGGCGGAGGA GAGCGCCCGT
TACGAGGCCG AACTGCGTAC GCCGGGCGAG ATCACCAAGC GTATCAAGCA GTTGGAGGAG
AAAATGATGC AGTTCGCTCG CGACCTAGAG TTCGAGGCTG CGGCGCAGTT GCGCGACGAG
ATCAGCCAGT TGCGCGAGCG GTTGATTACC AGCTGA
|
|---|
| Protein sequence | MSEFQLVTRF QPAGDQPEAI RQLVEGIEAG LSHQTLLGVT GSGKTFSIAN VIQHVQRPTL
VLAPNKTLAA QLYGEFKAFF PNNAVEYFVS YYDYYQPEAY VPSSDTFIEK DASINDHIEQ
MRLSATKALL ERRDAIIVTT VSCIYGLGSP ETYLKMVLHV DRGDKLDQRA LLRRLADLQY
TRNEMDFARA TFRVRGDVID IFPAESDLEA IRIELFDDEV ENIAAFDPLT GEVFRKLPRF
TFYPKSHYVT PRETLLEAVE GIKEELKERL EYLHKANKLV EAQRLEQRTR FDLEMILELG
YCNGIENYSR YLSGRPAGAP PPTLYDYLPP DALLVIDESH VSVPQVGAMY KGDRSRKETL
VEYGFRMPSA LDNRPMRFDE WEDVSPQTIF VSATPGPYEA EHAGRVVEQV VRPTGLVDPQ
VEIRPALTQV DDLLSEIRKR VAAGERVLAT TLTKRMAEDL SDYLADHDVR VRYLHSDIDT
VERVEIIRDL RLGTFDVLVG INLLREGLDM PEVSLVAILD ADKEGFLRSE RSLIQTIGRA
ARNLNGRAIL YADNVTGSMQ RAIDETERRR EKQIAFNEAN GIVPKGVVKD ITDILEGATV
PGARSKKRKG MAKAAEESAR YEAELRTPGE ITKRIKQLEE KMMQFARDLE FEAAAQLRDE
ISQLRERLIT S
|
|---|
| |