| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1381 |
|---|
| Symbol | |
|---|
| ID | 5869145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1544866 |
|---|
| End bp | 1545771 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546484 |
|---|
| Product | dTDP-4-dehydrorhamnose reductase |
|---|
| Protein accession | YP_001667624 |
|---|
| Protein GI | 167032393 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
|---|
| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.000309254 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTAT TGCTACTGGG CAGGGACGGC CAGGTAGGCT GGGAGCTGCA ACGCAGCCTG
GCCCCGCTGG GCCAGGTGCT GGCACTGAAC GCCCGTAGCC AGGCGCATTG TGGCGACTTG
GCCAACCTGC ATGGCCTGGC CGAAACCGTA CGCGCCTTCG CACCCGATGT CATCGTCAAC
GCCGCTGCCT ACACTGCCGT GGACAAGGCC GAAAGCGACC GGGAACTGGC CTTCAGGGTC
AACGCCGAAG CTGTCGATGT GCTGGCCCGA GCTGCCGCCG ACTGCGGCGC ACTGCTGGTA
CATTATTCCA CCGACTACGT GTTCCCGGGG CAGGGCACCC AGCCTTGGCG TGAGGACGAC
GCCGTCGGCC CCCTGAACAC CTATGGCGCC AGCAAGCTGG CTGGCGAGCA AGCCATTCTG
GCCGCTGGTT GCCAGCACCT GGTTTTCCGC ACGTGCTGGG TATATGCCGC CCGCGGCAAC
AACTTCGCCA AAACCATGCT GCGCCTGGCG GCGGAACGTG ACAGCCTCGG CGTGATCGAC
GACCAGCACG GCGCCCCGAC GGGCGCTGAA CTGATCGCAG ACATCACCGC CCACGCCATC
ACCGCCAGCC GCCGCAATCC TGCCCTGGCC GGCCTGTACC ACTTGGCCGC CGGCGGTGAA
ACCACCTGGT GCGGCTACGC CCGTTACGTA CTGGCGCAAG CGGCTGCCCA TGGCGTGCGG
CTGAAAACCC ATGCCGAACA GGTCAAGCCT TTGACCACTG AGGCCTACCC GACCCCGGCC
AAGCGGCCGG CCAACTCGCG TCTAGACACC AATAAACTGC AGAAGGCCTT TGCCCTGACC
CTGCCAGACT GGCGCCTGGG TGTGGCTCGC ATGCTGACGG AAATCCACGA GAAAGGACCA
CTATGA
|
|---|
| Protein sequence | MKVLLLGRDG QVGWELQRSL APLGQVLALN ARSQAHCGDL ANLHGLAETV RAFAPDVIVN
AAAYTAVDKA ESDRELAFRV NAEAVDVLAR AAADCGALLV HYSTDYVFPG QGTQPWREDD
AVGPLNTYGA SKLAGEQAIL AAGCQHLVFR TCWVYAARGN NFAKTMLRLA AERDSLGVID
DQHGAPTGAE LIADITAHAI TASRRNPALA GLYHLAAGGE TTWCGYARYV LAQAAAHGVR
LKTHAEQVKP LTTEAYPTPA KRPANSRLDT NKLQKAFALT LPDWRLGVAR MLTEIHEKGP
L
|
|---|
| |