| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1373 |
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| Symbol | |
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| ID | 5869137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1535034 |
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| End bp | 1536068 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641546476 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001667616 |
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| Protein GI | 167032385 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.45387 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00458395 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTAAAG GCAAGAAATT ACTCATCACC GGCGGAACCG GATCGTTTGG CAATGCTGTT
CTGAAGCGTT TCCTGGACAC TGATATTGCG GAAATCCGCA TTTTCAGCCG AGACGAAAAA
AAACAGGATG ACATGCGCAA GCGCTATGCC AGCTCCAAGC TGAAGTTTTA TATCGGCGAT
GTGCGTGACT ACCAAAGCGT TTTGAATGCG ACACGGGGTG TCGACTACAT TTTTCATGCG
GCCGCGCTGA AGCAGGTGCC ATCCTGCGAG TTTCACCCCA TGGAGGCGGT CAAGACCAAC
GTGATTGGTA CCGAAAACCT CTTGGAGGCC GCCATCCAGA ACGAAGTACG TCGGGTTGTT
TGCCTGAGCA CTGACAAGGC GGTTTACCCG ATCAACGCCA TGGGTATTTC CAAGGCGATG
ATGGAAAAGG TGATGGTTGC GAAATCACGT AACGTCGATG AGAAAAAGAC AGTGATTTGC
GGTACTCGCT ATGGCAACGT CATGGCTTCT CGTGGTTCGG TCATCCCCCT GTTCATCGAA
CAGATTCGTG CCGGCCAGGC ACTGACCTTG ACGGACCCTA ACATGACGCG CTTCATGATG
ACCTTGTCCG ATGCGGTCGA TCTCGTGCTG TATGCCTTCG AGCACGGTAA CAACGGCGAC
CTGTTCGTAC AGAAAGCGCC TGCCGCCACC ATTGAAGTGC TGGCCAAGGC GTTGACCGAA
CTGGTTGGCA AACCGGCGCA TCCGATCAAT GTCATCGGTA CCCGTCACGG CGAGAAGCTC
TACGAAGCGC TGCTGAGCCG AGAGGAACTG GTATGTGCCG AGGACATGGG GGATTACTAC
CGCGTGCCGC CAGATCTGCG TGACCTGAAC TACGCGAAAT TCGTGGAAGA GGGCGAGACC
CGCCTCTCCA TTACCGAGGA CTACAACTCG CACAACACCC AACGCCTCGA TGTCGCCGGG
ATGCAGCAAC TGCTGCGCAA GCTCGACTTC ATTCGTGCCA TCGAACGCGG CGAGCATGCG
ACCCCGGAGG AATGA
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| Protein sequence | MFKGKKLLIT GGTGSFGNAV LKRFLDTDIA EIRIFSRDEK KQDDMRKRYA SSKLKFYIGD
VRDYQSVLNA TRGVDYIFHA AALKQVPSCE FHPMEAVKTN VIGTENLLEA AIQNEVRRVV
CLSTDKAVYP INAMGISKAM MEKVMVAKSR NVDEKKTVIC GTRYGNVMAS RGSVIPLFIE
QIRAGQALTL TDPNMTRFMM TLSDAVDLVL YAFEHGNNGD LFVQKAPAAT IEVLAKALTE
LVGKPAHPIN VIGTRHGEKL YEALLSREEL VCAEDMGDYY RVPPDLRDLN YAKFVEEGET
RLSITEDYNS HNTQRLDVAG MQQLLRKLDF IRAIERGEHA TPEE
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