| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1363 |
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| Symbol | rpsA |
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| ID | 5869127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1524021 |
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| End bp | 1525697 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641546466 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001667606 |
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| Protein GI | 167032375 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0329116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0187285 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA GCTTTGCAGA ACTCTTTGAA GAAAGCCTGA AAACCCTCAA TCTTCAGCCG
GGTGCGATCA TCACCGGTAT CGTTGTCGAC ATCGACGGCG ACTGGGTTAC CGTACACGCT
GGCCTGAAGT CCGAGGGCGT CATCCCGCTC GAGCAGTTCT ACAACGAAGC TGGCGAGCTG
ACCATCAAGG TCGGTGACGA AGTGCACGTT GCGCTGGACG CGGTCGAAGA CGGCTTTGGC
GAAACCAAAC TGTCCCGTGA AAAAGCCAAG CGCGCCGAGT GCTGGATTGT TCTGGAAGCA
GCTTTCGCCG CCGAAGAAGT GGTCAAGGGC GTTATCAACG GTAAGGTTAA AGGCGGCTTC
ACTGTCGACG TTAACGGCAT CCGTGCGTTC CTGCCGGGCT CCCTGGTTGA TGTCCGCCCA
GTGCGCGACA CCACCCACCT GGAAGGCAAA GAGCTGGAAT TCAAGGTCAT CAAGCTGGAC
CAGAAGCGCA ACAACGTTGT TGTTTCGCGT CGCAGCGTGC TGGAAGCCGA GAACAGCGCC
GAGCGCGAAG CCCTGCTGGA AACCCTGCAG GAAGGCCAGC AAGTCAAGGG TATCGTCAAG
AACCTCACCG ACTACGGCGC ATTCGTGGAC CTGGGCGGTA TCGACGGCCT GCTGCACATC
ACCGACATGG CTTGGAAACG CATCAAGCAC CCATCGGAAA TCGTTAACGT TGGCGACGAA
GTCGACGTAC GCGTTCTGAA GTTCGACCGC GAGCGCAACC GCGTATCGCT GGGTCTGAAG
CAGATGGGCG AAGATCCGTG GGTAGCTATC ACTGCCCGTT ACCCAGAAGG TACTCGCGTA
CAAGCGCGCG TTACCAACCT GACCGACTAC GGCTGCTTCG CTGAGCTGGA AGAAGGCGTT
GAAGGTCTGG TACACGTTTC CGAAATGGAC TGGACCAACA AGAACATCCA CCCGTCGAAA
GTCGTTCAGG TTGGCGACGA AGTGGAAGTC ATGGTTCTGG ACATCGACGA AGAGCGTCGT
CGTATCTCCC TGGGCATCAA GCAGTGCAAG TCCAACCCAT GGGAAGACTT CTCCGGCCAG
TTCAACAAGG GTGACAAGAT CACCGGTACC ATCAAGTCGA TCACCGACTT CGGTATCTTC
ATCGGTCTGG ACGGCGGCAT CGACGGTCTG GTTCACCTGT CCGACATCTC CTGGAACGAA
ACCGGCGAAG AAGCCGTACG TCGTTTCAAG AAGGGCGACG AGCTGGAAAC CGTCATCCTG
TCGGTCGACC CAGAGCGCGA GCGCATCTCC CTGGGCATCA AGCAGCTGGA AGACGATCCG
TTCTCCAACT TCGTTGCTGT CAATGACAAG GGCGCTATCG TCAAGGGCAT CGTGAAAGAA
GTTGACGCCA AAGGCGCCAT CGTCACCCTG GCCGACGACA TCGAAGCTAC TCTGAAAGCT
TCCGAAATCA GCCGTGACCG CGTTGAAGAC GCGCGTAACG TTCTGAAGGA AGGCGAAGAG
ATCGAAGCCA AGATCATCAG CGTTGACCGC AAGTCCCGCG TTATCAGCCT GTCGATCAAA
TCGAAAGACG ACGCTGAAGA GCGCGAAGCC ATCCAGAGCC TGAAAAACGC TCCGGAAGCG
GCTGCCGACA CCACCATGGC TGCGCTGCTG CGCGAAGCAA TGGCCAAGCA GAACTGA
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| Protein sequence | MSESFAELFE ESLKTLNLQP GAIITGIVVD IDGDWVTVHA GLKSEGVIPL EQFYNEAGEL
TIKVGDEVHV ALDAVEDGFG ETKLSREKAK RAECWIVLEA AFAAEEVVKG VINGKVKGGF
TVDVNGIRAF LPGSLVDVRP VRDTTHLEGK ELEFKVIKLD QKRNNVVVSR RSVLEAENSA
EREALLETLQ EGQQVKGIVK NLTDYGAFVD LGGIDGLLHI TDMAWKRIKH PSEIVNVGDE
VDVRVLKFDR ERNRVSLGLK QMGEDPWVAI TARYPEGTRV QARVTNLTDY GCFAELEEGV
EGLVHVSEMD WTNKNIHPSK VVQVGDEVEV MVLDIDEERR RISLGIKQCK SNPWEDFSGQ
FNKGDKITGT IKSITDFGIF IGLDGGIDGL VHLSDISWNE TGEEAVRRFK KGDELETVIL
SVDPERERIS LGIKQLEDDP FSNFVAVNDK GAIVKGIVKE VDAKGAIVTL ADDIEATLKA
SEISRDRVED ARNVLKEGEE IEAKIISVDR KSRVISLSIK SKDDAEEREA IQSLKNAPEA
AADTTMAALL REAMAKQN
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